Variant report

Variant	rs17281398
Chromosome Location	chrX:154233774-154233775
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000214827	Chromatin interaction
ENSG00000182712	Chromatin interaction
ENSG00000165775	Chromatin interaction
ENSG00000185010	Chromatin interaction
ENSG00000185515	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17281377	1.00[ASW][hapmap];0.84[CEU][hapmap];1.00[LWK][hapmap];0.91[MKK][hapmap];0.95[TSI][hapmap]
rs6649625	1.00[LWK][hapmap]

Variant related diseases (count:1)

Disease	PMID	Source
Antineutrophil cytoplasmic antibody-associated vasculitis	22808956	GWAS catalog

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:154209600-154235600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chrX:154218400-154235400	Weak transcription	Liver	Liver
3	chrX:154232600-154234400	Enhancers	K562	blood
4	chrX:154232800-154234200	Enhancers	Pancreas	Pancrea
5	chrX:154232800-154234400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chrX:154232800-154235400	Weak transcription	HepG2	liver
7	chrX:154233000-154234200	Enhancers	Left Ventricle	heart
8	chrX:154233000-154234200	Enhancers	Right Atrium	heart
9	chrX:154233200-154234200	Enhancers	Ovary	ovary
10	chrX:154233400-154234400	Enhancers	Fetal Heart	heart
11	chrX:154233600-154234200	Enhancers	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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