Variant report

Variant	rs17281584
Chromosome Location	chr3:119064456-119064457
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:118994969..118996823-chr3:119062476..119065328,2	MCF-7	breast:
2	chr3:119041195..119042834-chr3:119061856..119064792,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000241155	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10511388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16829700	0.94[EUR][1000 genomes]
rs16829712	0.94[EUR][1000 genomes]
rs16829724	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17281570	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17281591	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73854484	1.00[ASN][1000 genomes]
rs878808	0.94[EUR][1000 genomes]
rs880097	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9289128	0.94[EUR][1000 genomes]
rs935618	0.94[EUR][1000 genomes]
rs9832224	0.88[EUR][1000 genomes]
rs9835407	0.94[EUR][1000 genomes]
rs9845965	0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3487859	chr3:118570588-119419623	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv3487860	chr3:118570588-119419623	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
3	nsv829694	chr3:119011488-119153579	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119042800-119070600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr3:119042800-119072000	Weak transcription	Thymus	Thymus
3	chr3:119043000-119069000	Weak transcription	Primary T cells from cord blood	blood
4	chr3:119046000-119064600	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:119049200-119071200	Weak transcription	Aorta	Aorta
6	chr3:119049600-119068000	Weak transcription	NH-A	brain
7	chr3:119050800-119064600	Weak transcription	HSMMtube	muscle
8	chr3:119050800-119075800	Weak transcription	Pancreas	Pancrea
9	chr3:119051000-119064800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr3:119052000-119064600	Weak transcription	Fetal Intestine Small	intestine
11	chr3:119053200-119064800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr3:119053200-119087200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr3:119053400-119068200	Weak transcription	Right Ventricle	heart
14	chr3:119053400-119087000	Weak transcription	Fetal Muscle Trunk	muscle
15	chr3:119053600-119067800	Weak transcription	Fetal Lung	lung
16	chr3:119053600-119071400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr3:119056400-119067800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr3:119056400-119068200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr3:119056400-119071600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr3:119057000-119064800	Weak transcription	HSMM	muscle
21	chr3:119057800-119068000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr3:119059800-119064800	Weak transcription	HUVEC	blood vessel
23	chr3:119060800-119067400	Weak transcription	Fetal Heart	heart
24	chr3:119062800-119064600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr3:119062800-119064800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr3:119063000-119064800	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr3:119063000-119070600	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr3:119063400-119068600	Weak transcription	GM12878-XiMat	blood
29	chr3:119063800-119068200	Weak transcription	Osteobl	bone
30	chr3:119064000-119065000	Enhancers	Colonic Mucosa	Colon
31	chr3:119064000-119066400	Enhancers	Lung	lung
32	chr3:119064000-119068200	Weak transcription	Brain Substantia Nigra	brain
33	chr3:119064200-119064600	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr3:119064200-119064600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr3:119064200-119064600	Enhancers	Rectal Mucosa Donor 29	rectum
36	chr3:119064200-119064600	Genic enhancers	Right Atrium	heart
37	chr3:119064200-119064800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
38	chr3:119064200-119064800	Enhancers	Placenta	Placenta
39	chr3:119064200-119065000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
40	chr3:119064200-119065000	Enhancers	Ovary	ovary
41	chr3:119064200-119065000	Enhancers	Sigmoid Colon	Sigmoid Colon
42	chr3:119064200-119065200	Genic enhancers	Cortex derived primary cultured neurospheres	brain
43	chr3:119064200-119065200	Enhancers	Brain Cingulate Gyrus	brain
44	chr3:119064200-119065200	Genic enhancers	Fetal Stomach	stomach
45	chr3:119064200-119065200	Enhancers	Left Ventricle	heart
46	chr3:119064200-119065800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr3:119064200-119065800	Enhancers	Fetal Muscle Leg	muscle
48	chr3:119064200-119066200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr3:119064200-119066200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr3:119064200-119066400	Enhancers	Rectal Mucosa Donor 31	rectum

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