Variant report

Variant	rs17283654
Chromosome Location	chr5:92248670-92248671
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1387514	1.00[AMR][1000 genomes]
rs163953	0.83[AMR][1000 genomes]
rs17082876	0.83[AMR][1000 genomes]
rs17284205	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17286491	0.83[AMR][1000 genomes]
rs186982	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs345922	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs345930	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015770	chr5:91911877-92498264	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv830398	chr5:92102826-92281331	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1022712	chr5:92191693-92415111	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1028930	chr5:92194772-92415111	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv823129	chr5:92222972-92280793	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92242600-92249400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:92245200-92252200	Weak transcription	Ovary	ovary
3	chr5:92245400-92252000	Weak transcription	Osteobl	bone
4	chr5:92245600-92249600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:92245800-92250200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr5:92246400-92251800	Weak transcription	Fetal Kidney	kidney
7	chr5:92246400-92252000	Weak transcription	Fetal Lung	lung
8	chr5:92246600-92258000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr5:92247200-92251800	Weak transcription	A549	lung
10	chr5:92247200-92252200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr5:92247400-92252000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:92247400-92258000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr5:92248000-92251600	Weak transcription	HepG2	liver
14	chr5:92248400-92249200	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr5:92248600-92254600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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