Variant report

Variant	rs17285057
Chromosome Location	chr21:39779352-39779353
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:39772520..39774352-chr21:39779301..39781096,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11701401	0.93[AMR][1000 genomes]
rs17285015	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2836380	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058886	chr21:39341560-39799638	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv834098	chr21:39691898-39845254	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	esv3440506	chr21:39778507-39781055	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3363892	chr21:39778782-39780880	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3372117	chr21:39779132-39780430	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39748800-39780200	Weak transcription	Right Ventricle	heart
2	chr21:39756200-39780000	Weak transcription	Ovary	ovary
3	chr21:39758600-39782400	Weak transcription	Esophagus	oesophagus
4	chr21:39759800-39780000	Weak transcription	Left Ventricle	heart
5	chr21:39770600-39796200	Weak transcription	Gastric	stomach
6	chr21:39772400-39794000	Weak transcription	Fetal Stomach	stomach
7	chr21:39772600-39803000	Weak transcription	Adipose Nuclei	Adipose
8	chr21:39772800-39780000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr21:39774400-39780000	Strong transcription	HUVEC	blood vessel
10	chr21:39775800-39780000	Weak transcription	Aorta	Aorta
11	chr21:39776600-39780000	Weak transcription	Spleen	Spleen
12	chr21:39776600-39780200	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr21:39776600-39780600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr21:39776600-39788000	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr21:39777000-39780000	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr21:39777000-39786200	Strong transcription	Primary hematopoietic stem cells	blood
17	chr21:39777000-39795200	Weak transcription	Lung	lung
18	chr21:39778000-39784800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr21:39779000-39780000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr21:39779000-39780000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr21:39779000-39782600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr21:39779200-39780000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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