Variant report

Variant	rs17286742
Chromosome Location	chr6:143837723-143837724
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:5)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:5 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RCOR1	chr6:143837714-143838010	K562	blood:	n/a	n/a
2	SPI1	chr6:143837674-143838137	HL-60	blood:	n/a	n/a
3	MAZ	chr6:143837674-143837890	K562	blood:	n/a	n/a
4	USF2	chr6:143837711-143837765	H1-hESC	embryonic stem cell:	n/a	n/a
5	POLR2A	chr6:143837676-143837819	MCF-7	breast:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:143835407..143839181-chr6:143839359..143841894,3	K562	blood:
2	chr6:143836199..143838556-chr6:143869163..143871034,2	MCF-7	breast:
3	chr6:143835971..143837808-chr6:143863905..143866347,2	MCF-7	breast:
4	chr6:143829496..143838775-chr6:143854591..143861568,17	MCF-7	breast:
5	chr6:143836970..143840867-chr6:143848057..143852037,4	MCF-7	breast:

No data

Variant related genes	Relation type
FUCA2	TF binding region
ENSG00000112419	Chromatin interaction

rs_ID	r²[population]
rs13197430	0.85[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13197626	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143833200-143838200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:143833200-143849600	Weak transcription	Primary T cells from cord blood	blood
3	chr6:143833400-143837800	Weak transcription	Primary B cells from peripheral blood	blood
4	chr6:143833400-143837800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr6:143833400-143838400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr6:143833400-143838400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr6:143833400-143849400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr6:143833600-143837800	Weak transcription	Fetal Thymus	thymus
9	chr6:143833600-143838200	Weak transcription	Fetal Intestine Small	intestine
10	chr6:143834600-143838000	Enhancers	Placenta	Placenta
11	chr6:143834600-143855800	Weak transcription	Duodenum Mucosa	Duodenum
12	chr6:143835000-143850000	Weak transcription	Fetal Intestine Large	intestine
13	chr6:143835800-143838800	Enhancers	Stomach Mucosa	stomach
14	chr6:143836000-143838400	Enhancers	Fetal Muscle Leg	muscle
15	chr6:143836000-143838800	Enhancers	Left Ventricle	heart
16	chr6:143836200-143838000	Enhancers	Right Atrium	heart
17	chr6:143836400-143838800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
18	chr6:143836600-143838800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:143836800-143848400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr6:143837000-143837800	Enhancers	GM12878-XiMat	blood
21	chr6:143837000-143838000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr6:143837000-143838200	Weak transcription	Gastric	stomach
23	chr6:143837000-143838600	Enhancers	Right Ventricle	heart
24	chr6:143837200-143838800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
25	chr6:143837200-143838800	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr6:143837400-143837800	Flanking Active TSS	Fetal Heart	heart
27	chr6:143837400-143838000	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr6:143837400-143838000	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr6:143837400-143838400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
30	chr6:143837400-143838400	Weak transcription	Pancreas	Pancrea
31	chr6:143837400-143838800	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr6:143837600-143837800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
33	chr6:143837600-143837800	Enhancers	Small Intestine	intestine
34	chr6:143837600-143838600	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr6:143837600-143838600	Enhancers	K562	blood
36	chr6:143837600-143838800	Enhancers	HUES64 Cell Line	embryonic stem cell

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