Variant report

Variant	rs17286978
Chromosome Location	chr7:26633643-26633644
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10247053	0.90[ASN][1000 genomes]
rs10254403	0.90[ASN][1000 genomes]
rs10258273	0.83[ASN][1000 genomes]
rs12536073	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12538653	0.80[AMR][1000 genomes]
rs12538703	0.82[ASN][1000 genomes]
rs12538778	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1544454	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17287580	0.83[ASN][1000 genomes]
rs17359666	0.83[ASN][1000 genomes]
rs2214810	0.83[ASN][1000 genomes]
rs4722621	0.83[ASN][1000 genomes]
rs4722622	0.83[ASN][1000 genomes]
rs58869468	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61267197	0.83[ASN][1000 genomes]
rs6944839	0.83[ASN][1000 genomes]
rs6945115	0.83[ASN][1000 genomes]
rs6964688	0.83[ASN][1000 genomes]
rs7777206	0.82[EUR][1000 genomes]
rs7782566	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
4	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
5	nsv830929	chr7:26587888-26749735	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26631800-26635000	Enhancers	Fetal Muscle Leg	muscle
2	chr7:26632400-26633800	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr7:26632400-26634800	Enhancers	Fetal Brain Male	brain
4	chr7:26632800-26633800	Enhancers	Adipose Nuclei	Adipose
5	chr7:26632800-26633800	Enhancers	Fetal Heart	heart
6	chr7:26632800-26635000	Enhancers	Fetal Brain Female	brain
7	chr7:26632800-26635000	Enhancers	Fetal Lung	lung
8	chr7:26633200-26634000	Enhancers	Brain Germinal Matrix	brain
9	chr7:26633200-26634400	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr7:26633600-26633800	Flanking Active TSS	Stomach Smooth Muscle	stomach
11	chr7:26633600-26636200	Enhancers	Fetal Stomach	stomach

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