Variant report

Variant	rs17289334
Chromosome Location	chr3:160545514-160545515
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1455870	0.85[JPT][hapmap]
rs1455871	0.85[JPT][hapmap]
rs16831442	0.85[JPT][hapmap]
rs16831457	0.85[JPT][hapmap]
rs16831516	0.85[JPT][hapmap]
rs16831520	0.85[JPT][hapmap]
rs17236662	0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs2068817	0.85[JPT][hapmap]
rs4627794	0.82[JPT][hapmap]
rs6771910	0.82[JPT][hapmap]
rs7632089	1.00[CHD][hapmap];0.82[JPT][hapmap]
rs7633401	0.85[JPT][hapmap]
rs7640802	1.00[CHD][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv1009249	chr3:160496237-160627378	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv536780	chr3:160496237-160627378	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv432495	chr3:160534298-160548298	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160542800-160549000	Enhancers	Fetal Heart	heart
2	chr3:160543600-160547200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:160543600-160547400	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr3:160544000-160547200	Weak transcription	Right Ventricle	heart
5	chr3:160544000-160547400	Weak transcription	Left Ventricle	heart
6	chr3:160544000-160547400	Weak transcription	Right Atrium	heart
7	chr3:160544200-160545600	Weak transcription	Esophagus	oesophagus
8	chr3:160544800-160547400	Enhancers	Skeletal Muscle Female	skeletal muscle
9	chr3:160544800-160547800	Enhancers	Psoas Muscle	Psoas
10	chr3:160545000-160546800	Weak transcription	Stomach Mucosa	stomach
11	chr3:160545200-160546800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr3:160545200-160547000	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr3:160545400-160545800	Enhancers	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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