Variant report

Variant	rs17291089
Chromosome Location	chr5:58265605-58265606
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12188697	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1400224	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs17719258	0.91[CEU][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv830312	chr5:58191579-58382226	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58255200-58270200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:58259600-58266800	Weak transcription	HSMM	muscle
3	chr5:58260200-58270200	Weak transcription	HSMMtube	muscle
4	chr5:58262000-58268800	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr5:58262400-58269000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr5:58262400-58273400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr5:58262800-58268200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr5:58263200-58270000	Weak transcription	Small Intestine	intestine
9	chr5:58263200-58271400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr5:58263800-58270000	Weak transcription	Left Ventricle	heart
11	chr5:58263800-58270200	Weak transcription	Brain Angular Gyrus	brain
12	chr5:58264000-58270200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr5:58264000-58270200	Weak transcription	Gastric	stomach
14	chr5:58264200-58270000	Weak transcription	Fetal Brain Female	brain
15	chr5:58264400-58266800	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr5:58264400-58270000	Genic enhancers	A549	lung
17	chr5:58264600-58270200	Weak transcription	Spleen	Spleen
18	chr5:58264800-58268000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:58265000-58267000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr5:58265000-58268400	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr5:58265000-58268600	Weak transcription	Primary neutrophils fromperipheralblood	blood
22	chr5:58265200-58266400	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr5:58265200-58270200	Enhancers	Pancreatic Islets	Pancreatic Islet
24	chr5:58265400-58266400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr5:58265400-58266600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr5:58265400-58267000	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr5:58265400-58267000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr5:58265400-58268800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr5:58265400-58270200	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr5:58265600-58276600	Weak transcription	HUES6 Cell Line	embryonic stem cell

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