Variant report

Variant	rs172967
Chromosome Location	chr14:45289062-45289063
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10083439	0.93[AFR][1000 genomes]
rs10134284	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10141821	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10146481	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10150646	0.93[ASW][hapmap];0.96[LWK][hapmap];0.88[MKK][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes]
rs11844786	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11847113	0.93[EUR][1000 genomes]
rs11851218	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs12146993	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12147665	0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12323322	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1593278	0.91[EUR][1000 genomes]
rs170693	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17092465	0.97[ASN][1000 genomes]
rs17092468	0.91[EUR][1000 genomes]
rs17115611	0.96[ASN][1000 genomes]
rs17115612	1.00[ASN][1000 genomes]
rs17115618	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17115619	0.97[ASN][1000 genomes]
rs17115642	0.89[EUR][1000 genomes]
rs17115651	0.96[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs17115667	1.00[CEU][hapmap];0.96[GIH][hapmap];0.81[TSI][hapmap];0.89[EUR][1000 genomes]
rs1952393	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2081383	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2113723	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2295157	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs229754	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs229755	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28419436	0.89[EUR][1000 genomes]
rs28507671	0.89[AMR][1000 genomes]
rs3736747	0.92[AFR][1000 genomes]
rs60521816	0.91[AFR][1000 genomes]
rs7140739	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs7145831	0.91[YRI][hapmap]
rs7161626	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs722706	0.95[EUR][1000 genomes]
rs73343261	0.83[AMR][1000 genomes]
rs7492763	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs8003020	0.95[EUR][1000 genomes]
rs8009677	0.95[EUR][1000 genomes]
rs8011828	0.88[ASW][hapmap];1.00[CEU][hapmap];0.96[GIH][hapmap];0.81[MKK][hapmap];0.86[TSI][hapmap];0.83[YRI][hapmap]
rs8016855	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869289	chr14:44752382-45447415	Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv901832	chr14:44847444-45415597	Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	nsv995092	chr14:44973489-45393462	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
4	esv2758356	chr14:45057833-45313666	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv2759986	chr14:45057833-45313666	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv901838	chr14:45069249-45297050	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1050829	chr14:45157388-45318232	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1047886	chr14:45189653-45543182	Strong transcription Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
9	nsv542079	chr14:45189653-45543182	Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
10	nsv901841	chr14:45198196-45719643	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
11	nsv1053437	chr14:45232269-45424222	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:45281600-45289600	Weak transcription	Right Atrium	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links