The 2.0 version of rSNPBase

Variant report

Variant rs1729760
Chromosome Location chr13:95752024-95752025
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:55 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr13:95723800-95760000 Weak transcription Colon Smooth Muscle Colon
2 chr13:95724000-95760600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
3 chr13:95727000-95752600 Weak transcription HSMM muscle
4 chr13:95727000-95791600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
5 chr13:95727000-95812000 Weak transcription Primary T helper cells fromperipheralblood blood
6 chr13:95727600-95761000 Weak transcription K562 blood
7 chr13:95727800-95767800 Weak transcription Primary T regulatory cells fromperipheralblood blood
8 chr13:95728400-95778800 Weak transcription Ovary ovary
9 chr13:95728600-95776000 Weak transcription Gastric stomach
10 chr13:95731200-95791600 Weak transcription Skeletal Muscle Male skeletal muscle
11 chr13:95731600-95756000 Weak transcription Stomach Smooth Muscle stomach
12 chr13:95731600-95756600 Weak transcription Rectal Mucosa Donor 31 rectum
13 chr13:95740400-95752200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
14 chr13:95740400-95753000 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
15 chr13:95740400-95756600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
16 chr13:95740600-95752800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
17 chr13:95740600-95772200 Weak transcription Rectal Mucosa Donor 29 rectum
18 chr13:95740800-95791200 Weak transcription NHLF lung
19 chr13:95741000-95756800 Weak transcription Primary hematopoietic stem cells short term culture blood
20 chr13:95741400-95763400 Weak transcription Left Ventricle heart
21 chr13:95741600-95772600 Weak transcription Primary hematopoietic stem cells blood
22 chr13:95742800-95755200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
23 chr13:95744200-95765200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
24 chr13:95746800-95752400 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
25 chr13:95749600-95761000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
26 chr13:95750000-95753200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
27 chr13:95750400-95757000 Weak transcription Fetal Intestine Small intestine
28 chr13:95750400-95812400 Weak transcription Duodenum Mucosa Duodenum
29 chr13:95750400-95815400 Weak transcription Fetal Intestine Large intestine
30 chr13:95751000-95793400 Weak transcription Fetal Kidney kidney
31 chr13:95751200-95752200 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
32 chr13:95751200-95752800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
33 chr13:95751200-95753600 Enhancers Stomach Mucosa stomach
34 chr13:95751200-95754200 Enhancers HUVEC blood vessel
35 chr13:95751400-95777600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
36 chr13:95751600-95752200 Strong transcription Sigmoid Colon Sigmoid Colon
37 chr13:95751600-95752800 Flanking Active TSS A549 lung
38 chr13:95751600-95756400 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
39 chr13:95751600-95756600 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
40 chr13:95751600-95795600 Weak transcription Small Intestine intestine
41 chr13:95751800-95752200 ZNF genes & repeats Lung lung
42 chr13:95751800-95752200 ZNF genes & repeats Rectal Smooth Muscle rectum
43 chr13:95751800-95752200 Enhancers NH-A brain
44 chr13:95751800-95752600 Strong transcription Primary T cells from cord blood blood
45 chr13:95751800-95752800 Flanking Active TSS Muscle Satellite Cultured Cells --
46 chr13:95751800-95753600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
47 chr13:95751800-95754000 Enhancers NHDF-Ad bronchial
48 chr13:95752000-95752200 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
49 chr13:95752000-95752200 Strong transcription GM12878-XiMat blood
50 chr13:95752000-95752400 Weak transcription Fetal Lung lung

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Last update: Aug 31, 2015