Variant report

Variant	rs17301743
Chromosome Location	chr10:4845697-4845698
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11252758	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11252759	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12360475	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv894792	chr10:4832920-5498724	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4841800-4851200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:4843800-4846000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:4844000-4848800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr10:4844000-4850400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr10:4844600-4845800	Enhancers	HMEC	breast
6	chr10:4844800-4846200	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr10:4845000-4845800	Enhancers	HepG2	liver
8	chr10:4845000-4845800	Enhancers	NHDF-Ad	bronchial
9	chr10:4845000-4847600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:4845000-4848200	Enhancers	HUVEC	blood vessel
11	chr10:4845400-4846800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr10:4845600-4846600	Weak transcription	NH-A	brain
13	chr10:4845600-4846800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr10:4845600-4847600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:4845600-4849800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr10:4845600-4850000	Weak transcription	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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