Variant report

Variant	rs17304632
Chromosome Location	chr19:35928566-35928567
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA2	chr19:35928025-35928597	A549	lung:	n/a	n/a
2	FOXA2	chr19:35927992-35928629	A549	lung:	n/a	n/a
3	TCF12	chr19:35927168-35928770	A549	lung:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:35925851..35929118-chr19:35935158..35937128,3	MCF-7	breast:
2	chr19:35928198..35930798-chr19:35945495..35948169,2	MCF-7	breast:
3	chr19:35923144..35924892-chr19:35926828..35929356,2	K562	blood:
4	chr19:35927404..35931820-chr19:35937516..35944359,8	MCF-7	breast:
5	chr19:35927284..35930618-chr19:35941279..35944054,4	MCF-7	breast:
6	chr19:35758352..35760440-chr19:35928095..35930665,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000232680	TF binding region
ENSG00000105698	Chromatin interaction
ENSG00000126262	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs35779459	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1060100	chr19:35658505-36170042	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv543993	chr19:35658505-36170042	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
4	nsv833810	chr19:35782588-35971959	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
5	nsv833811	chr19:35850257-36029535	Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:35912600-35938000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr19:35920600-35930000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr19:35923800-35930000	Enhancers	Fetal Muscle Leg	muscle
4	chr19:35924400-35928600	Enhancers	Fetal Kidney	kidney
5	chr19:35924400-35929600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr19:35925400-35929600	Enhancers	Fetal Intestine Large	intestine
7	chr19:35925600-35928800	Enhancers	Fetal Intestine Small	intestine
8	chr19:35925600-35930000	Enhancers	Fetal Stomach	stomach
9	chr19:35926000-35928800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
10	chr19:35926000-35929000	Enhancers	Small Intestine	intestine
11	chr19:35926200-35928600	Enhancers	Liver	Liver
12	chr19:35926200-35929600	Enhancers	Lung	lung
13	chr19:35926200-35930000	Enhancers	Ovary	ovary
14	chr19:35926200-35930000	Enhancers	Pancreas	Pancrea
15	chr19:35926400-35928600	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
16	chr19:35926400-35928600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr19:35926400-35928800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr19:35926400-35928800	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr19:35926800-35928800	Enhancers	Esophagus	oesophagus
20	chr19:35926800-35928800	Enhancers	Left Ventricle	heart
21	chr19:35926800-35929600	Enhancers	Right Ventricle	heart
22	chr19:35927000-35930000	Enhancers	Placenta Amnion	Placenta Amnion
23	chr19:35927600-35928800	Enhancers	Right Atrium	heart
24	chr19:35927800-35928600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr19:35927800-35928600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
26	chr19:35927800-35928800	Enhancers	Spleen	Spleen
27	chr19:35927800-35929800	Enhancers	GM12878-XiMat	blood
28	chr19:35927800-35930000	Enhancers	Fetal Muscle Trunk	muscle
29	chr19:35928000-35928600	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr19:35928000-35928600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr19:35928000-35928600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr19:35928000-35928600	Weak transcription	Brain Hippocampus Middle	brain
33	chr19:35928000-35928600	Enhancers	Fetal Thymus	thymus
34	chr19:35928000-35928600	Enhancers	Hela-S3	cervix
35	chr19:35928000-35928800	Enhancers	Primary B cells from cord blood	blood
36	chr19:35928000-35928800	Enhancers	Duodenum Mucosa	Duodenum
37	chr19:35928000-35928800	Enhancers	Stomach Mucosa	stomach
38	chr19:35928000-35929800	Enhancers	Placenta	Placenta
39	chr19:35928200-35928600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr19:35928200-35928800	Enhancers	Adipose Nuclei	Adipose
41	chr19:35928200-35928800	Enhancers	Colonic Mucosa	Colon
42	chr19:35928200-35928800	Enhancers	Rectal Mucosa Donor 31	rectum
43	chr19:35928200-35929000	Enhancers	Primary hematopoietic stem cells	blood
44	chr19:35928200-35929200	Weak transcription	Colon Smooth Muscle	Colon
45	chr19:35928200-35930000	Enhancers	Fetal Heart	heart
46	chr19:35928400-35928600	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
47	chr19:35928400-35928600	Flanking Active TSS	Fetal Lung	lung
48	chr19:35928400-35928600	Enhancers	Rectal Mucosa Donor 29	rectum
49	chr19:35928400-35928800	Bivalent Enhancer	HepG2	liver
50	chr19:35928400-35929000	Enhancers	A549	lung

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