Variant report

Variant	rs17307464
Chromosome Location	chr16:70755144-70755145
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:70753099..70755239-chr16:70768073..70771716,3	MCF-7	breast:
2	chr16:70741732..70744635-chr16:70754684..70756403,2	K562	blood:
3	chr16:70747879..70752178-chr16:70754716..70759017,5	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11641091	0.89[AFR][1000 genomes]
rs11645862	0.87[AFR][1000 genomes]
rs11649476	1.00[CHB][hapmap];0.89[JPT][hapmap]
rs1551526	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.82[MEX][hapmap];0.82[TSI][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16970442	0.83[YRI][hapmap]
rs4985562	0.81[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.81[ASN][1000 genomes]
rs55837830	0.87[ASN][1000 genomes]
rs55996451	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs936303	0.85[ASN][1000 genomes]
rs9924014	0.84[YRI][hapmap]
rs9924460	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517391	chr16:70666410-70840490	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv457517	chr16:70666722-70840490	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv572945	chr16:70666722-70840490	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv906876	chr16:70677785-70757555	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv906877	chr16:70677785-70766378	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
6	nsv906878	chr16:70677785-70782922	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
7	nsv906879	chr16:70677785-70790831	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
8	nsv906880	chr16:70677785-70796515	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
9	nsv1059226	chr16:70708698-70779144	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
10	nsv906889	chr16:70724001-70790831	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	nsv906890	chr16:70740707-70790831	Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv1061191	chr16:70754975-71201367	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17307464	TPPP3	cis	parietal	SCAN

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70727000-70770800	Weak transcription	GM12878-XiMat	blood
2	chr16:70733200-70759400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr16:70749800-70759000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr16:70749800-70759600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr16:70750200-70759000	Weak transcription	Esophagus	oesophagus
6	chr16:70750200-70759600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr16:70750400-70759600	Weak transcription	NHEK	skin
8	chr16:70750400-70764800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr16:70750400-70767000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr16:70750600-70758200	Weak transcription	Left Ventricle	heart
11	chr16:70750600-70759400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr16:70750600-70766600	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr16:70750800-70758200	Weak transcription	Brain Angular Gyrus	brain
14	chr16:70750800-70758200	Weak transcription	Colon Smooth Muscle	Colon
15	chr16:70750800-70758200	Weak transcription	Right Atrium	heart
16	chr16:70750800-70771800	Weak transcription	A549	lung
17	chr16:70751000-70758000	Strong transcription	Fetal Intestine Small	intestine
18	chr16:70751000-70758200	Weak transcription	Rectal Smooth Muscle	rectum
19	chr16:70751000-70759400	Weak transcription	HSMM	muscle
20	chr16:70751200-70758200	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr16:70751800-70756000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr16:70751800-70757400	Strong transcription	Fetal Intestine Large	intestine
23	chr16:70752000-70756800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr16:70752400-70756600	Strong transcription	HepG2	liver
25	chr16:70752400-70757400	Strong transcription	Fetal Stomach	stomach
26	chr16:70752600-70755800	Strong transcription	Gastric	stomach
27	chr16:70752600-70756200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr16:70752600-70756200	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr16:70752600-70757000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr16:70752600-70757800	Strong transcription	Duodenum Mucosa	Duodenum
31	chr16:70752600-70758000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr16:70752600-70758400	Strong transcription	Thymus	Thymus
33	chr16:70752600-70770800	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr16:70752800-70757600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr16:70752800-70758200	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr16:70753000-70757200	Weak transcription	Fetal Muscle Leg	muscle
37	chr16:70753000-70758000	Weak transcription	NHLF	lung
38	chr16:70753200-70756800	Strong transcription	Primary B cells from cord blood	blood
39	chr16:70753200-70766400	Strong transcription	Primary T cells from cord blood	blood
40	chr16:70753400-70756000	Strong transcription	Dnd41	blood
41	chr16:70753400-70756000	Strong transcription	HSMMtube	muscle
42	chr16:70753400-70756400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr16:70753400-70756600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr16:70753400-70756600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr16:70753400-70756800	Strong transcription	Rectal Mucosa Donor 29	rectum
46	chr16:70753400-70767200	Strong transcription	Primary B cells from peripheral blood	blood
47	chr16:70753600-70755200	Strong transcription	Duodenum Smooth Muscle	Duodenum
48	chr16:70753600-70755800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr16:70753600-70756400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr16:70753600-70757600	Strong transcription	Fetal Muscle Trunk	muscle

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