Variant report

Variant	rs17308838
Chromosome Location	chr11:26208454-26208455
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11029422	1.00[AFR][1000 genomes]
rs11029462	1.00[AFR][1000 genomes]
rs11029520	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832094	chr11:26130733-26292782	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26207400-26208800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr11:26207400-26211400	Enhancers	NHLF	lung
3	chr11:26207600-26210600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr11:26207800-26208800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:26207800-26210200	Enhancers	NHDF-Ad	bronchial
6	chr11:26207800-26210600	Enhancers	NHEK	skin
7	chr11:26208000-26210400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:26208000-26211600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr11:26208000-26211600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:26208200-26208800	Enhancers	Osteobl	bone
11	chr11:26208200-26209000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr11:26208200-26211000	Enhancers	Hela-S3	cervix
13	chr11:26208400-26209200	Weak transcription	HMEC	breast
14	chr11:26208400-26209800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr11:26208400-26211000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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