Variant report

Variant	rs17310798
Chromosome Location	chr3:133562939-133562940
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:133561821..133563908-chr3:133564497..133566487,2	K562	blood:
2	chr3:133562773..133565495-chr3:133567323..133570271,2	MCF-7	breast:
3	chr3:133524725..133527368-chr3:133562861..133565634,2	MCF-7	breast:
4	chr3:133562408..133564079-chr3:133564403..133565997,2	K562	blood:

Variant related genes	Relation type
ENSG00000144867	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11921187	1.00[JPT][hapmap]
rs17376019	1.00[JPT][hapmap]
rs3811660	1.00[JPT][hapmap]
rs6793673	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877506	chr3:133423473-133569777	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv829729	chr3:133444871-133620387	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133539400-133572200	Weak transcription	Fetal Brain Male	brain
2	chr3:133542000-133563600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:133542800-133569000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:133544600-133573200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:133544600-133584200	Weak transcription	Esophagus	oesophagus
6	chr3:133545000-133582800	Weak transcription	Gastric	stomach
7	chr3:133548000-133563400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr3:133548000-133564400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr3:133558200-133564200	Weak transcription	Aorta	Aorta
10	chr3:133558400-133564200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:133558400-133572400	Weak transcription	Brain Substantia Nigra	brain
12	chr3:133558600-133564000	Weak transcription	Brain Hippocampus Middle	brain
13	chr3:133558600-133572200	Weak transcription	Adipose Nuclei	Adipose
14	chr3:133558600-133588000	Weak transcription	Spleen	Spleen
15	chr3:133558800-133572000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr3:133559200-133563600	Weak transcription	Fetal Muscle Trunk	muscle
17	chr3:133559200-133564200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr3:133560000-133572200	Weak transcription	Brain Anterior Caudate	brain
19	chr3:133560200-133570000	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr3:133560400-133563200	Weak transcription	Right Ventricle	heart
21	chr3:133560400-133564000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr3:133560400-133587000	Weak transcription	Stomach Smooth Muscle	stomach
23	chr3:133560600-133571800	Weak transcription	Brain Germinal Matrix	brain
24	chr3:133560800-133572200	Weak transcription	Fetal Brain Female	brain
25	chr3:133561200-133563200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr3:133562000-133563200	Enhancers	K562	blood
27	chr3:133562000-133563400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr3:133562000-133563400	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr3:133562000-133563400	Enhancers	NHLF	lung
30	chr3:133562200-133563200	Enhancers	NH-A	brain
31	chr3:133562400-133563400	Enhancers	NHDF-Ad	bronchial
32	chr3:133562400-133572000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr3:133562600-133563000	Enhancers	Osteobl	bone
34	chr3:133562600-133563400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr3:133562600-133566000	Weak transcription	Brain Cingulate Gyrus	brain
36	chr3:133562800-133563000	Enhancers	Brain Angular Gyrus	brain
37	chr3:133562800-133563400	Enhancers	Left Ventricle	heart
38	chr3:133562800-133572800	Weak transcription	Brain Inferior Temporal Lobe	brain

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