Variant report

Variant	rs17315501
Chromosome Location	chr3:139029676-139029677
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:139024562..139026768-chr3:139028600..139030441,3	K562	blood:
2	chr3:139029076..139033479-chr3:139037377..139040244,5	K562	blood:
3	chr3:139021730..139024477-chr3:139029081..139032333,3	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4374556	1.00[AFR][1000 genomes]
rs4401385	1.00[AFR][1000 genomes]
rs62270785	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591856	chr3:139000844-139037832	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1005158	chr3:139001736-139073011	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv877543	chr3:139021139-139327261	Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139019200-139031800	Enhancers	K562	blood
2	chr3:139024600-139032200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:139024600-139032400	Enhancers	NHDF-Ad	bronchial
4	chr3:139026000-139032000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:139026000-139032200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr3:139026000-139032600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr3:139026000-139038800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr3:139026400-139030000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:139026400-139032400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr3:139026600-139032000	Enhancers	NHLF	lung
11	chr3:139026600-139032400	Enhancers	Osteobl	bone
12	chr3:139026600-139033200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:139026800-139031600	Enhancers	Hela-S3	cervix
14	chr3:139026800-139033200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr3:139027000-139030000	Enhancers	NH-A	brain
16	chr3:139027000-139033800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr3:139027200-139030000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr3:139027200-139030000	Enhancers	HSMMtube	muscle
19	chr3:139027200-139030200	Enhancers	HMEC	breast
20	chr3:139027600-139029800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr3:139027800-139029800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr3:139027800-139032400	Enhancers	Placenta Amnion	Placenta Amnion
23	chr3:139028000-139029800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr3:139028000-139030000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr3:139028000-139036000	Weak transcription	Pancreas	Pancrea
26	chr3:139028200-139030400	Enhancers	Spleen	Spleen
27	chr3:139028400-139030000	Enhancers	Ovary	ovary
28	chr3:139028600-139029800	Enhancers	NHEK	skin
29	chr3:139028800-139029800	Enhancers	A549	lung
30	chr3:139029000-139029800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr3:139029000-139029800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr3:139029000-139033000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr3:139029200-139031400	Weak transcription	Placenta	Placenta
34	chr3:139029600-139031600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr3:139029600-139032200	Enhancers	HSMM	muscle

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