Variant report

Variant	rs17317214
Chromosome Location	chr7:99990976-99990977
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:99990597..99992604-chr7:100020661..100023007,2	MCF-7	breast:
2	chr7:99988956..99991156-chr7:99997016..99999433,2	K562	blood:
3	chr7:99987127..99989737-chr7:99990266..99992845,2	K562	blood:
4	chr7:99968617..99970756-chr7:99989605..99991411,2	K562	blood:
5	chr7:99989101..99992789-chr7:99996981..99999855,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000078487	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2075668	0.86[JPT][hapmap]
rs55721535	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73161753	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7806537	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350965	chr7:99747460-100146105	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	304 gene(s)	inside rSNPs	diseases
2	esv1829095	chr7:99814675-100494084	Bivalent Enhancer Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	393 gene(s)	inside rSNPs	diseases
3	nsv831071	chr7:99918025-100113413	Weak transcription Enhancers Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	287 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:99940800-100014600	Weak transcription	Right Atrium	heart
2	chr7:99962400-100020600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr7:99966400-99998000	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr7:99972600-99996000	Weak transcription	Brain Hippocampus Middle	brain
5	chr7:99972800-99994800	Weak transcription	Spleen	Spleen
6	chr7:99973000-99999400	Weak transcription	Brain Anterior Caudate	brain
7	chr7:99976200-99998200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr7:99985400-99994800	Weak transcription	Ovary	ovary
9	chr7:99987200-99991000	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr7:99987800-100025400	Weak transcription	Right Ventricle	heart
11	chr7:99988200-99994200	Weak transcription	Fetal Thymus	thymus
12	chr7:99988600-99994800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr7:99988600-99994800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:99988600-99994800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr7:99988600-99999800	Weak transcription	Gastric	stomach
16	chr7:99989600-99991000	Enhancers	GM12878-XiMat	blood
17	chr7:99989600-99993400	Genic enhancers	Primary monocytes fromperipheralblood	blood
18	chr7:99989600-99995400	Weak transcription	Brain Substantia Nigra	brain
19	chr7:99989800-99991000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr7:99990600-99992000	Enhancers	Primary B cells from cord blood	blood
21	chr7:99990600-99992000	Enhancers	Primary B cells from peripheral blood	blood
22	chr7:99990800-99991600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
23	chr7:99990800-99992000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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