Variant report

Variant	rs1732377
Chromosome Location	chr12:105489422-105489423
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10778366	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10861327	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10861328	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10861329	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10861330	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10861331	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10861332	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10861333	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10861335	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10861336	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11112347	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11112349	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11112350	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11112351	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11112352	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11112356	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11612252	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11613233	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11613261	0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1196804	0.80[EUR][1000 genomes]
rs1196809	0.80[EUR][1000 genomes]
rs1196814	0.80[EUR][1000 genomes]
rs1196822	0.81[EUR][1000 genomes]
rs1196835	0.81[EUR][1000 genomes]
rs1196836	0.81[EUR][1000 genomes]
rs1196854	0.80[EUR][1000 genomes]
rs1196856	0.80[EUR][1000 genomes]
rs1196866	0.80[EUR][1000 genomes]
rs1196868	0.80[EUR][1000 genomes]
rs1196879	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1196880	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1196882	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1196883	0.98[ASN][1000 genomes]
rs1196886	0.96[ASN][1000 genomes]
rs1201657	0.80[EUR][1000 genomes]
rs12367626	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12581638	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17242777	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1732378	0.80[EUR][1000 genomes]
rs1732379	0.80[EUR][1000 genomes]
rs2374451	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2440693	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2440717	0.80[EUR][1000 genomes]
rs4144467	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4144468	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56118650	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56188643	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56369757	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61938827	0.81[EUR][1000 genomes]
rs7308195	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7311691	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73179949	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7962686	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899495	chr12:104990469-105527011	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv832505	chr12:105315352-105497765	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv832506	chr12:105461274-105637561	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:105487000-105493200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr12:105488800-105490200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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