Variant report

Variant	rs17328812
Chromosome Location	chr5:37889762-37889763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:37888900..37890961-chr5:37891571..37893453,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17388414	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17388428	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1895436	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs55643647	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949716	chr5:37179341-37967352	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
2	nsv881401	chr5:37849688-37901408	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1028115	chr5:37882426-37936352	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:37886400-37890800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr5:37887000-37889800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr5:37887000-37892400	Weak transcription	Colon Smooth Muscle	Colon
4	chr5:37887200-37892600	Weak transcription	Ovary	ovary
5	chr5:37887800-37890800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:37888000-37891000	Enhancers	HMEC	breast
7	chr5:37888200-37890600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr5:37888200-37890800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:37888200-37891000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr5:37888400-37889800	Enhancers	HSMMtube	muscle
11	chr5:37888400-37890600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:37888400-37890600	Enhancers	Hela-S3	cervix
13	chr5:37888400-37890600	Enhancers	NH-A	brain
14	chr5:37888400-37890600	Enhancers	NHDF-Ad	bronchial
15	chr5:37888400-37890600	Enhancers	Osteobl	bone
16	chr5:37888600-37890000	Enhancers	HSMM	muscle
17	chr5:37888600-37890800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr5:37889000-37890200	Weak transcription	Esophagus	oesophagus
19	chr5:37889200-37890400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr5:37889400-37890600	Enhancers	NHLF	lung
21	chr5:37889400-37893800	Enhancers	Liver	Liver
22	chr5:37889600-37889800	Flanking Active TSS	NHEK	skin
23	chr5:37889600-37890200	Enhancers	Muscle Satellite Cultured Cells	--
24	chr5:37889600-37890600	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr5:37889600-37890800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links