Variant report

Variant	rs17328992
Chromosome Location	chr11:8474884-8474885
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1026021	1.00[LWK][hapmap];0.85[MKK][hapmap]
rs16938253	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751035	chr11:8431654-8685451	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv519052	chr11:8453594-8474884	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
3	esv32551	chr11:8457023-8534642	Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs17328992	SNORA45	cis	cerebellum	SCAN
rs17328992	OR10A4	cis	parietal	SCAN
rs17328992	RPL27A	cis	parietal	SCAN
rs17328992	STK33	cis	parietal	SCAN
rs17328992	AMPD3	cis	parietal	SCAN
rs17328992	TRIM66	cis	Whole Blood	GTEx
rs17328992	RPL27A	cis	cerebellum	SCAN
rs17328992	OR56B4	cis	parietal	SCAN
rs17328992	SNORA45	cis	parietal	SCAN
rs17328992	STK33	cis	cerebellum	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:8460200-8481200	Weak transcription	Fetal Kidney	kidney
2	chr11:8462000-8484600	Weak transcription	Ovary	ovary
3	chr11:8464400-8483400	Weak transcription	Primary hematopoietic stem cells	blood
4	chr11:8464400-8488200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:8464600-8484800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:8464600-8485800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr11:8464600-8488200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr11:8464600-8489000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr11:8464600-8495800	Weak transcription	Fetal Heart	heart
10	chr11:8471800-8482600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr11:8473000-8477400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:8474000-8476800	Weak transcription	Right Atrium	heart
13	chr11:8474000-8477800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr11:8474200-8479200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr11:8474200-8491400	Weak transcription	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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