Variant report

Variant	rs17329590
Chromosome Location	chr4:93971333-93971334
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:93970682..93973329-chr4:93973340..93974971,2	MCF-7	breast:
2	chr4:93968750..93971596-chr4:93971794..93974511,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17019990	1.00[JPT][hapmap]
rs17020096	0.83[ASN][1000 genomes]
rs17020101	0.83[ASN][1000 genomes]
rs17263777	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2904467	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35451605	0.83[ASN][1000 genomes]
rs72885763	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72885764	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs768652	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916371	chr4:93673026-93994807	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv879611	chr4:93707288-93987251	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv997640	chr4:93790604-93982695	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1007177	chr4:93834536-94155349	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv537186	chr4:93834536-94155349	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv879614	chr4:93869564-93989892	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv931937	chr4:93869856-94155348	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1011740	chr4:93904073-94073963	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3374790	chr4:93959718-94063251	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:93964800-93971400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr4:93969400-93974000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr4:93969600-93971400	Weak transcription	Brain Anterior Caudate	brain
4	chr4:93969600-93974200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr4:93969600-93974200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr4:93969800-93971400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr4:93969800-93971600	Weak transcription	Brain Hippocampus Middle	brain
8	chr4:93969800-93972000	Weak transcription	Brain Cingulate Gyrus	brain
9	chr4:93970200-93971800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr4:93970800-93971600	Enhancers	Brain Substantia Nigra	brain
11	chr4:93971000-93971400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr4:93971000-93971400	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr4:93971000-93972200	Enhancers	HUES48 Cell Line	embryonic stem cell
14	chr4:93971000-93972200	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr4:93971000-93972400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr4:93971000-93973000	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr4:93971000-93973200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr4:93971000-93973600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr4:93971200-93971600	Enhancers	Fetal Brain Female	brain
20	chr4:93971200-93973000	Enhancers	Brain Germinal Matrix	brain

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