Variant report

Variant	rs17331699
Chromosome Location	chr11:103937905-103937906
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11600096	0.89[ASN][1000 genomes]
rs11824542	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs12805893	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs1483501	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17332348	1.00[CHB][hapmap]
rs2515081	1.00[CHB][hapmap]
rs260847	0.89[ASN][1000 genomes]
rs260850	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs260854	0.89[ASN][1000 genomes]
rs260855	0.89[ASN][1000 genomes]
rs260863	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs34987759	0.89[ASN][1000 genomes]
rs35016460	0.89[ASN][1000 genomes]
rs35965296	0.89[ASN][1000 genomes]
rs55966490	0.89[ASN][1000 genomes]
rs589796	1.00[CHB][hapmap]
rs67576530	0.89[ASN][1000 genomes]
rs7102675	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs7113370	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs7121786	1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128670	1.00[CHB][hapmap];0.89[ASN][1000 genomes]
rs72975261	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7927365	1.00[CHB][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2760322	chr11:103760085-104374141	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1051448	chr11:103864766-104274112	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
3	nsv541157	chr11:103864766-104274112	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1043976	chr11:103881236-104526403	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	nsv526709	chr11:103936469-103946161	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:103928400-103939400	Weak transcription	Pancreas	Pancrea
2	chr11:103937600-103938000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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