Variant report

Variant	rs17331702
Chromosome Location	chr2:213535577-213535578
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10178687	1.00[JPT][hapmap]
rs10180614	1.00[JPT][hapmap]
rs11676119	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11682441	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11683491	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11688167	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11693009	0.92[AFR][1000 genomes]
rs11693575	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1384291	1.00[JPT][hapmap]
rs16848675	1.00[JPT][hapmap]
rs17271707	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17325821	1.00[JPT][hapmap]
rs17329875	1.00[JPT][hapmap]
rs17331220	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs59370887	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6752299	1.00[JPT][hapmap]
rs72933016	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72933051	0.80[EUR][1000 genomes]
rs72933064	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72937335	0.83[EUR][1000 genomes]
rs72937340	0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs72937345	0.80[EUR][1000 genomes]
rs72937349	0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs72937365	0.92[AFR][1000 genomes]
rs72937368	0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs72937385	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs72949011	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72949015	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72949018	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72949040	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73987421	0.87[AMR][1000 genomes]
rs9283525	1.00[JPT][hapmap]
rs931217	0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs956558	0.92[AFR][1000 genomes];0.80[EUR][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:213531200-213547800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr2:213534200-213535600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links