Variant report

Variant	rs17331955
Chromosome Location	chr5:94108923-94108924
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12653036	1.00[AFR][1000 genomes]
rs40625	1.00[AFR][1000 genomes]
rs468301	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs72775320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72775379	1.00[AFR][1000 genomes]
rs72777308	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2648135	chr5:94108484-94110061	Strong transcription Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94074200-94127600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:94083000-94125800	Weak transcription	HUVEC	blood vessel
3	chr5:94097800-94128400	Weak transcription	Primary T cells from cord blood	blood
4	chr5:94102200-94128000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr5:94102600-94111800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr5:94104800-94128000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr5:94105200-94109800	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr5:94105200-94127800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr5:94106000-94126000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr5:94106000-94126000	Weak transcription	Lung	lung
11	chr5:94106400-94128800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr5:94107800-94109000	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr5:94108200-94110000	Weak transcription	Fetal Thymus	thymus
14	chr5:94108600-94110200	Weak transcription	Primary monocytes fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links