Variant report

Variant	rs17334436
Chromosome Location	chr2:187577810-187577811
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:187575138..187576648-chr2:187577435..187579069,2	K562	blood:
2	chr2:187571625..187574199-chr2:187577740..187579942,2	MCF-7	breast:
3	chr2:187575138..187577104-chr2:187577435..187579000,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12621915	1.00[YRI][hapmap]
rs17406319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757844	chr2:187332780-187580547	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	esv2759107	chr2:187332780-187580547	Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv428069	chr2:187575692-187766209	ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187560400-187579400	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr2:187560600-187582200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:187560600-187584200	Weak transcription	Fetal Lung	lung
4	chr2:187567400-187581400	Weak transcription	Fetal Brain Female	brain
5	chr2:187570200-187578400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr2:187570600-187578800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr2:187573000-187578800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr2:187575000-187580000	Enhancers	Brain Angular Gyrus	brain
9	chr2:187576200-187582600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr2:187577000-187578200	Enhancers	Brain Anterior Caudate	brain
11	chr2:187577000-187580400	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr2:187577000-187580600	Enhancers	Brain Substantia Nigra	brain
13	chr2:187577600-187579600	Enhancers	Brain Cingulate Gyrus	brain
14	chr2:187577600-187580000	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr2:187577600-187580200	Enhancers	Brain Hippocampus Middle	brain
16	chr2:187577600-187580400	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr2:187577800-187578000	Enhancers	H9 Cell Line	embryonic stem cell
18	chr2:187577800-187578000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr2:187577800-187578000	ZNF genes & repeats	Aorta	Aorta
20	chr2:187577800-187578000	Enhancers	Pancreas	Pancrea
21	chr2:187577800-187580000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr2:187577800-187580000	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr2:187577800-187580200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr2:187577800-187580400	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr2:187577800-187580600	Enhancers	HUES48 Cell Line	embryonic stem cell

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