Variant report

Variant	rs17334457
Chromosome Location	chr2:187581097-187581098
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17333634	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17406326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61763601	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428069	chr2:187575692-187766209	ZNF genes & repeats Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:187560600-187582200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr2:187560600-187584200	Weak transcription	Fetal Lung	lung
3	chr2:187567400-187581400	Weak transcription	Fetal Brain Female	brain
4	chr2:187576200-187582600	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr2:187578000-187583600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr2:187578800-187583800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr2:187579000-187581600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr2:187579200-187583800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr2:187580000-187581200	Weak transcription	Brain Angular Gyrus	brain
10	chr2:187580000-187581400	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr2:187580000-187581600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:187580000-187581600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:187580000-187581600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr2:187580000-187581800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr2:187580000-187582200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr2:187580000-187582400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr2:187580200-187581200	Weak transcription	Brain Hippocampus Middle	brain
18	chr2:187580200-187581400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr2:187580200-187582000	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr2:187580200-187582200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr2:187580400-187581400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr2:187580400-187581400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr2:187580400-187581400	Weak transcription	Brain Anterior Caudate	brain
24	chr2:187580400-187581600	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr2:187580400-187581600	Weak transcription	Brain Cingulate Gyrus	brain
26	chr2:187580400-187581600	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr2:187580400-187582200	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr2:187580600-187582000	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr2:187581000-187582400	Enhancers	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links