Variant report

Variant	rs17338542
Chromosome Location	chrX:31453403-31453404
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10521972	0.82[MEX][hapmap]
rs1112432	0.82[JPT][hapmap]
rs12006623	0.82[CEU][hapmap]
rs16989625	1.00[CEU][hapmap];0.84[MEX][hapmap]
rs17338507	1.00[TSI][hapmap]
rs17338514	1.00[TSI][hapmap]
rs17338556	0.87[ASW][hapmap];0.86[CHD][hapmap];1.00[GIH][hapmap]
rs17340749	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap]
rs17340784	0.82[JPT][hapmap]
rs1921967	0.82[JPT][hapmap]
rs2178617	0.82[CEU][hapmap]
rs7054748	0.82[CEU][hapmap]
rs7879959	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs7883354	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869389	chrX:31207964-31963300	Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv481896	chrX:31212683-31546984	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3407256	chrX:31214281-31548379	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv481964	chrX:31270220-31672751	Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv2758567	chrX:31363616-31519148	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3447095	chrX:31441731-31519629	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv818022	chrX:31446803-31481035	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv491930	chrX:31449215-31543991	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:31452400-31453800	Weak transcription	Fetal Kidney	kidney
2	chrX:31452600-31454400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chrX:31452600-31454800	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chrX:31452800-31453800	Weak transcription	Fetal Brain Male	brain
5	chrX:31452800-31454000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chrX:31453000-31454800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chrX:31453000-31455000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chrX:31453200-31454400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chrX:31453200-31454800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chrX:31453200-31455000	Enhancers	HepG2	liver
11	chrX:31453400-31453600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
12	chrX:31453400-31453800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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