Variant report

Variant	rs17341957
Chromosome Location	chr5:52555527-52555528
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12153508	1.00[AFR][1000 genomes]
rs12186437	1.00[EUR][1000 genomes]
rs12187206	1.00[EUR][1000 genomes]
rs13164822	1.00[EUR][1000 genomes]
rs34511919	1.00[EUR][1000 genomes]
rs35645771	1.00[EUR][1000 genomes]
rs3846489	1.00[EUR][1000 genomes]
rs6873167	1.00[EUR][1000 genomes]
rs7704042	1.00[EUR][1000 genomes]
rs7728422	1.00[EUR][1000 genomes]
rs7737662	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949005	chr5:52188028-52808229	Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	esv2752745	chr5:52422063-53343529	Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv830297	chr5:52492494-52707758	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv522454	chr5:52492677-52571758	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:52541800-52559200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr5:52548600-52561400	Enhancers	HMEC	breast
3	chr5:52550000-52558800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr5:52550200-52556600	Weak transcription	NHDF-Ad	bronchial
5	chr5:52550200-52556800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr5:52551200-52556400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr5:52552200-52555600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:52553000-52557000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr5:52553400-52557000	Weak transcription	HSMM	muscle
10	chr5:52553600-52558800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:52554000-52556400	Weak transcription	Osteobl	bone
12	chr5:52554000-52556600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr5:52554000-52557000	Weak transcription	NHLF	lung
14	chr5:52555200-52556400	ZNF genes & repeats	NHEK	skin
15	chr5:52555400-52559800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links