Variant report

Variant	rs17345424
Chromosome Location	chr5:106700940-106700941
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17344856	0.83[AMR][1000 genomes]
rs17345521	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17345752	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17403761	0.80[AMR][1000 genomes]
rs17411832	0.89[EUR][1000 genomes]
rs2859	0.89[EUR][1000 genomes]
rs56890592	0.83[AMR][1000 genomes]
rs66609347	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6882277	0.89[EUR][1000 genomes]
rs6884043	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7706841	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv2760982	chr5:106680849-106702473	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106694800-106702400	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr5:106697000-106701200	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr5:106698000-106706000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr5:106698200-106701000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr5:106698400-106706000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr5:106699000-106702000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr5:106700400-106701200	Enhancers	Primary hematopoietic stem cells	blood
8	chr5:106700400-106702000	Enhancers	Primary T cells from cord blood	blood
9	chr5:106700600-106701000	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr5:106700600-106701000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr5:106700600-106701000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr5:106700600-106701200	Enhancers	A549	lung
13	chr5:106700600-106701400	Enhancers	Primary B cells from cord blood	blood
14	chr5:106700600-106701400	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr5:106700600-106702000	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr5:106700600-106720000	Weak transcription	Aorta	Aorta
17	chr5:106700800-106701200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr5:106700800-106701800	Enhancers	Primary B cells from peripheral blood	blood
19	chr5:106700800-106702000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr5:106700800-106702000	Flanking Active TSS	GM12878-XiMat	blood
21	chr5:106700800-106704600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr5:106700800-106704800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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