Variant report

Variant	rs17349974
Chromosome Location	chr10:4173666-4173667
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:3826628..3829205-chr10:4172781..4176385,4	MCF-7	breast:
2	chr10:4173609..4176501-chr10:4189443..4191688,2	MCF-7	breast:
3	chr10:3827534..3829286-chr10:4172120..4173887,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17131942	1.00[ASN][1000 genomes]
rs72776601	1.00[ASN][1000 genomes]
rs73585267	1.00[ASN][1000 genomes]
rs73585275	1.00[ASN][1000 genomes]
rs73585277	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3407901	chr10:4172452-4176750	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4167200-4174200	Weak transcription	Pancreas	Pancrea
2	chr10:4169400-4175200	Enhancers	Primary B cells from peripheral blood	blood
3	chr10:4170800-4174400	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr10:4171000-4173800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:4171400-4173800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
6	chr10:4171400-4174800	Enhancers	Hela-S3	cervix
7	chr10:4171800-4174800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:4172000-4175000	Enhancers	Osteobl	bone
9	chr10:4172200-4175200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
10	chr10:4172200-4175200	Enhancers	Fetal Thymus	thymus
11	chr10:4172400-4174200	Enhancers	Adipose Nuclei	Adipose
12	chr10:4172400-4174400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr10:4172600-4173800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
14	chr10:4172600-4173800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
15	chr10:4172600-4174000	Enhancers	HMEC	breast
16	chr10:4172600-4174200	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr10:4172600-4174800	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr10:4172600-4175200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr10:4172800-4173800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
20	chr10:4172800-4173800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
21	chr10:4172800-4173800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr10:4172800-4173800	Flanking Active TSS	Dnd41	blood
23	chr10:4172800-4174200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr10:4172800-4174200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr10:4172800-4174200	Weak transcription	Left Ventricle	heart
26	chr10:4172800-4174200	Weak transcription	Lung	lung
27	chr10:4172800-4174400	Flanking Active TSS	Primary B cells from cord blood	blood
28	chr10:4172800-4174400	Weak transcription	Placenta	Placenta
29	chr10:4172800-4174400	Enhancers	Thymus	Thymus
30	chr10:4172800-4174400	Flanking Active TSS	HUVEC	blood vessel
31	chr10:4172800-4174600	Enhancers	Fetal Stomach	stomach
32	chr10:4172800-4174800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr10:4172800-4175200	Enhancers	Small Intestine	intestine
34	chr10:4172800-4175200	Enhancers	HSMM	muscle
35	chr10:4173000-4174000	Flanking Active TSS	Primary T cells from cord blood	blood
36	chr10:4173000-4174200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr10:4173000-4174200	Weak transcription	Gastric	stomach
38	chr10:4173000-4174200	Enhancers	NHDF-Ad	bronchial
39	chr10:4173000-4174400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr10:4173000-4174600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
41	chr10:4173000-4174600	Enhancers	HepG2	liver
42	chr10:4173000-4174800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr10:4173000-4175000	Enhancers	NHEK	skin
44	chr10:4173200-4173800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
45	chr10:4173200-4173800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
46	chr10:4173200-4173800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
47	chr10:4173200-4173800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr10:4173200-4173800	Flanking Active TSS	GM12878-XiMat	blood
49	chr10:4173200-4174000	Flanking Active TSS	Primary hematopoietic stem cells	blood
50	chr10:4173200-4174200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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