Variant report

Variant	rs1735053
Chromosome Location	chr11:4116674-4116675
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:3857735..3860667-chr11:4115366..4118226,4	K562	blood:
2	chr11:4114277..4116935-chr11:4123036..4125551,3	K562	blood:
3	chr11:4116202..4117899-chr11:4118829..4121335,2	MCF-7	breast:
4	chr11:4116176..4118411-chr11:4121664..4124693,3	MCF-7	breast:
5	chr11:4116211..4118977-chr11:4131945..4133652,2	K562	blood:
6	chr11:3829231..3830814-chr11:4115429..4117638,2	K562	blood:
7	chr11:4109002..4112620-chr11:4113600..4116906,4	MCF-7	breast:
8	chr11:3860690..3862593-chr11:4116069..4117581,2	MCF-7	breast:
9	chr11:4116269..4118457-chr11:4145281..4147453,2	MCF-7	breast:
10	chr11:4115917..4116813-chr15:90776274..90777512,3	Hela-S3	cervix:

No data

Variant related genes	Relation type
ENSG00000167323	Chromatin interaction
ENSG00000167325	Chromatin interaction
ENSG00000183208	Chromatin interaction
ENSG00000148985	Chromatin interaction
ENSG00000177105	Chromatin interaction
ENSG00000185043	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10742229	0.87[CEU][hapmap]
rs10742249	1.00[JPT][hapmap]
rs10767853	0.82[CEU][hapmap]
rs10835678	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11030814	0.87[CEU][hapmap]
rs1442725	0.87[CEU][hapmap]
rs1465952	0.87[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs1662163	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1662177	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1735055	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2289570	0.87[CEU][hapmap]
rs232045	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2412341	1.00[CEU][hapmap];0.88[CHB][hapmap];0.82[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2735690	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2898950	0.87[CEU][hapmap]
rs2920141	0.87[CEU][hapmap]
rs2920142	0.87[CEU][hapmap]
rs2959071	0.87[CEU][hapmap]
rs2959072	0.87[CEU][hapmap]
rs4910881	0.87[CEU][hapmap]
rs6578445	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7115615	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7945918	0.86[CEU][hapmap]
rs894455	0.87[CEU][hapmap]
rs9667777	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv896896	chr11:4010409-4185595	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv2758253	chr11:4055945-4510188	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	esv2759797	chr11:4055945-4510188	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	nsv428248	chr11:4055945-4510188	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
5	nsv832053	chr11:4096527-4330263	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:4115000-4117000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr11:4115000-4117000	Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr11:4115000-4117000	Active TSS	HUES6 Cell Line	embryonic stem cell
4	chr11:4115000-4117000	Active TSS	iPS-15b Cell Line	embryonic stem cell
5	chr11:4115000-4117000	Active TSS	iPS-18 Cell Line	embryonic stem cell
6	chr11:4115000-4117000	Active TSS	iPS-20b Cell Line	embryonic stem cell
7	chr11:4115000-4117200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:4115000-4117200	Active TSS	Rectal Mucosa Donor 29	rectum
9	chr11:4115000-4117400	Active TSS	H1 Cell Line	embryonic stem cell
10	chr11:4115000-4117400	Active TSS	H9 Cell Line	embryonic stem cell
11	chr11:4115000-4117400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:4115000-4117600	Active TSS	HUES64 Cell Line	embryonic stem cell
13	chr11:4115200-4116800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
14	chr11:4115200-4116800	Active TSS	Esophagus	oesophagus
15	chr11:4115200-4116800	Active TSS	Fetal Intestine Small	intestine
16	chr11:4115200-4117000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
17	chr11:4115200-4117000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr11:4115200-4117000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr11:4115200-4117000	Active TSS	Muscle Satellite Cultured Cells	--
20	chr11:4115200-4117000	Active TSS	Aorta	Aorta
21	chr11:4115200-4117000	Active TSS	Left Ventricle	heart
22	chr11:4115200-4117000	Active TSS	A549	lung
23	chr11:4115200-4117200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr11:4115200-4117200	Active TSS	Rectal Mucosa Donor 31	rectum
25	chr11:4115200-4117400	Active TSS	ES-I3 Cell Line	embryonic stem cell
26	chr11:4115200-4117400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr11:4115200-4117400	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr11:4115200-4117400	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr11:4115200-4117600	Active TSS	Pancreatic Islets	Pancreatic Islet
30	chr11:4115200-4117600	Active TSS	Right Atrium	heart
31	chr11:4115400-4116800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr11:4115400-4116800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr11:4115400-4116800	Active TSS	Colon Smooth Muscle	Colon
34	chr11:4115400-4116800	Active TSS	Fetal Kidney	kidney
35	chr11:4115400-4116800	Active TSS	Placenta Amnion	Placenta Amnion
36	chr11:4115400-4116800	Active TSS	Stomach Mucosa	stomach
37	chr11:4115400-4116800	Active TSS	K562	blood
38	chr11:4115400-4116800	Active TSS	NHLF	lung
39	chr11:4115400-4117000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr11:4115400-4117000	Active TSS	Ovary	ovary
41	chr11:4115400-4117000	Active TSS	NHDF-Ad	bronchial
42	chr11:4115400-4117200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr11:4115400-4117200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr11:4115400-4117200	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr11:4115400-4117200	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
46	chr11:4115400-4117200	Active TSS	Psoas Muscle	Psoas
47	chr11:4115400-4118200	Active TSS	GM12878-XiMat	blood
48	chr11:4115600-4116800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr11:4115600-4116800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr11:4115600-4116800	Active TSS	Primary T helper naive cells from peripheral blood	blood

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