Variant report

Variant	rs17350653
Chromosome Location	chr10:4220308-4220309
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12267612	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2104169	0.91[EUR][1000 genomes]
rs4880666	0.85[CEU][hapmap];0.95[EUR][1000 genomes]
rs4881298	0.84[GIH][hapmap]
rs4881301	0.86[CEU][hapmap];0.93[TSI][hapmap];0.95[EUR][1000 genomes]
rs55966175	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7088561	0.85[CEU][hapmap];0.87[YRI][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7907648	0.86[CEU][hapmap];0.93[TSI][hapmap];0.96[EUR][1000 genomes]
rs7923955	0.89[GIH][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4215800-4223400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr10:4218000-4229800	Weak transcription	Aorta	Aorta
3	chr10:4218200-4223400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:4218600-4223400	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:4219200-4221200	Enhancers	Adipose Nuclei	Adipose
6	chr10:4219200-4223800	Weak transcription	Primary B cells from peripheral blood	blood
7	chr10:4219400-4223000	Weak transcription	NHDF-Ad	bronchial
8	chr10:4219400-4223800	Weak transcription	GM12878-XiMat	blood
9	chr10:4219800-4221000	Weak transcription	Fetal Brain Male	brain
10	chr10:4220000-4225600	Weak transcription	Fetal Lung	lung
11	chr10:4220200-4221400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:4220200-4223400	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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