Variant report

Variant	rs17351698
Chromosome Location	chr7:69140889-69140890
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10487944	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17140848	1.00[AMR][1000 genomes]
rs17140871	1.00[AMR][1000 genomes]
rs17141015	0.83[AMR][1000 genomes]
rs17350770	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17353228	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2270162	1.00[AMR][1000 genomes]
rs4140975	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023885	chr7:68894896-69158290	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv538915	chr7:68894896-69158290	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv916011	chr7:68942155-69330800	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv428169	chr7:69021482-69196743	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv831021	chr7:69122169-69364491	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv1034380	chr7:69137914-69171449	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69125000-69142000	Weak transcription	Fetal Stomach	stomach
2	chr7:69125000-69142400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr7:69135400-69141600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr7:69135400-69142800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr7:69135800-69141400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr7:69136400-69142400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr7:69136800-69142200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr7:69138000-69143200	Weak transcription	Left Ventricle	heart
9	chr7:69138400-69142400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr7:69138600-69141800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr7:69138600-69142200	Weak transcription	Brain Hippocampus Middle	brain
12	chr7:69138600-69142600	Weak transcription	Fetal Brain Male	brain
13	chr7:69138600-69143200	Weak transcription	Right Atrium	heart
14	chr7:69138800-69141800	Weak transcription	Fetal Brain Female	brain
15	chr7:69139200-69141800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr7:69139400-69142200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr7:69139400-69142400	Weak transcription	Brain Germinal Matrix	brain
18	chr7:69139400-69143200	Weak transcription	Brain Angular Gyrus	brain
19	chr7:69139800-69150800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr7:69140000-69141000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr7:69140000-69141200	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr7:69140000-69141200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr7:69140000-69142400	Weak transcription	Brain Anterior Caudate	brain
24	chr7:69140200-69141000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr7:69140200-69141000	Enhancers	GM12878-XiMat	blood
26	chr7:69140200-69141200	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr7:69140200-69141200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr7:69140200-69141200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr7:69140200-69141200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr7:69140200-69141200	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr7:69140200-69142000	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr7:69140200-69142000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr7:69140200-69142200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr7:69140200-69142200	Weak transcription	Colon Smooth Muscle	Colon
35	chr7:69140200-69142400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr7:69140200-69142400	Weak transcription	Adipose Nuclei	Adipose
37	chr7:69140200-69142400	Weak transcription	Brain Cingulate Gyrus	brain
38	chr7:69140200-69142400	Weak transcription	Brain Substantia Nigra	brain
39	chr7:69140200-69142400	Weak transcription	Fetal Lung	lung
40	chr7:69140200-69142400	Weak transcription	Fetal Thymus	thymus
41	chr7:69140200-69142600	Weak transcription	Placenta Amnion	Placenta Amnion
42	chr7:69140200-69142800	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr7:69140200-69142800	Weak transcription	Fetal Kidney	kidney
44	chr7:69140200-69143000	Weak transcription	Pancreas	Pancrea
45	chr7:69140200-69143000	Weak transcription	Stomach Smooth Muscle	stomach
46	chr7:69140400-69141800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr7:69140600-69141200	Enhancers	Psoas Muscle	Psoas
48	chr7:69140800-69141000	Weak transcription	Placenta	Placenta
49	chr7:69140800-69142600	Weak transcription	Ovary	ovary
50	chr7:69140800-69143000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links