The 2.0 version of rSNPBase

Variant report

Variant rs17354544
Chromosome Location chr2:179227134-179227135
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:40 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:179183800-179247800 Weak transcription Psoas Muscle Psoas
2 chr2:179194600-179229400 Weak transcription K562 blood
3 chr2:179195400-179229000 Weak transcription Brain Substantia Nigra brain
4 chr2:179198400-179227400 Weak transcription NHEK skin
5 chr2:179199000-179241200 Weak transcription Fetal Adrenal Gland Adrenal Gland
6 chr2:179199600-179240400 Weak transcription Fetal Stomach stomach
7 chr2:179201800-179240000 Weak transcription Stomach Smooth Muscle stomach
8 chr2:179201800-179240400 Weak transcription Fetal Muscle Trunk muscle
9 chr2:179201800-179240400 Weak transcription HSMMtube muscle
10 chr2:179201800-179253600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
11 chr2:179201800-179268200 Weak transcription HSMM muscle
12 chr2:179202400-179227400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
13 chr2:179202400-179230600 Weak transcription Fetal Brain Male brain
14 chr2:179202400-179248000 Weak transcription NH-A brain
15 chr2:179209200-179253000 Weak transcription Esophagus oesophagus
16 chr2:179209600-179227200 Weak transcription HMEC breast
17 chr2:179210800-179257200 Weak transcription Pancreas Pancrea
18 chr2:179213200-179229400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
19 chr2:179215200-179248800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
20 chr2:179215600-179239800 Weak transcription Brain Anterior Caudate brain
21 chr2:179217400-179240400 Weak transcription Aorta Aorta
22 chr2:179217400-179248400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
23 chr2:179217600-179239600 Weak transcription Skeletal Muscle Female skeletal muscle
24 chr2:179217600-179241800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
25 chr2:179217800-179239000 Weak transcription Skeletal Muscle Male skeletal muscle
26 chr2:179218200-179240000 Weak transcription Brain Inferior Temporal Lobe brain
27 chr2:179219000-179248000 Weak transcription Left Ventricle heart
28 chr2:179221200-179227800 Weak transcription Muscle Satellite Cultured Cells --
29 chr2:179224800-179227400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr2:179224800-179228400 Weak transcription Adipose Nuclei Adipose
31 chr2:179224800-179228600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
32 chr2:179224800-179239800 Weak transcription Breast Myoepithelial Primary Cells Breast
33 chr2:179225000-179229200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
34 chr2:179225000-179257800 Weak transcription Lung lung
35 chr2:179225800-179233000 Weak transcription Ovary ovary
36 chr2:179226000-179228400 Strong transcription Cortex derived primary cultured neurospheres brain
37 chr2:179226000-179229400 Weak transcription HUES48 Cell Line embryonic stem cell
38 chr2:179226200-179227600 Strong transcription Liver Liver
39 chr2:179226600-179257200 Weak transcription Gastric stomach
40 chr2:179227000-179240600 Weak transcription Brain Angular Gyrus brain

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Last update: Aug 31, 2015