Variant report

Variant	rs17354781
Chromosome Location	chr3:59526681-59526682
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:59524667..59527497-chr3:59528444..59530855,2	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17275985	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4679587	0.83[ASN][1000 genomes]
rs62250725	0.93[ASN][1000 genomes]
rs9832756	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9837518	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9841772	0.91[ASN][1000 genomes]
rs9848067	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9855650	0.89[CHB][hapmap];0.91[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011181	chr3:58665373-59542339	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv536574	chr3:58665373-59542339	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv534257	chr3:58855959-59606464	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv876836	chr3:59500394-59664687	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59518000-59530800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr3:59523000-59528000	Weak transcription	Fetal Heart	heart
3	chr3:59524000-59526800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr3:59524000-59526800	Enhancers	Fetal Brain Male	brain
5	chr3:59524400-59526800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:59524400-59529200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr3:59525200-59526800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr3:59525200-59527400	Enhancers	GM12878-XiMat	blood
9	chr3:59525400-59526800	Enhancers	Brain Germinal Matrix	brain
10	chr3:59525600-59526800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr3:59525600-59526800	Enhancers	Muscle Satellite Cultured Cells	--
12	chr3:59525600-59526800	Enhancers	NH-A	brain
13	chr3:59525600-59528400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr3:59525800-59526800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr3:59526000-59526800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr3:59526000-59526800	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr3:59526000-59526800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr3:59526200-59526800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr3:59526200-59527200	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr3:59526200-59527400	Enhancers	H1 Cell Line	embryonic stem cell
21	chr3:59526400-59526800	Active TSS	iPS-20b Cell Line	embryonic stem cell
22	chr3:59526400-59526800	Flanking Active TSS	Osteobl	bone
23	chr3:59526400-59527200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr3:59526400-59527200	Enhancers	HSMM	muscle
25	chr3:59526400-59528600	Enhancers	Dnd41	blood
26	chr3:59526600-59526800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
27	chr3:59526600-59526800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
28	chr3:59526600-59526800	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr3:59526600-59526800	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr3:59526600-59527000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr3:59526600-59527200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr3:59526600-59531600	Weak transcription	Fetal Brain Female	brain

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