Variant report

Variant	rs17357858
Chromosome Location	chr7:105550207-105550208
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:105409060..105411272-chr7:105549383..105550898,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs193837	1.00[ASW][hapmap]
rs2067537	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027213	chr7:105438610-106022869	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs17357858	PUS7	cis	lymphoblastoid	seeQTL
rs17357858	ALKBH4	cis	cerebellum	SCAN
rs17357858	DPY19L2P2	cis	parietal	SCAN

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105518400-105562800	Weak transcription	Aorta	Aorta
2	chr7:105519800-105550600	Weak transcription	NHLF	lung
3	chr7:105520200-105550400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr7:105533200-105550600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:105535800-105564800	Weak transcription	Ovary	ovary
6	chr7:105535800-105566600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr7:105536000-105551400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:105537400-105551200	Weak transcription	Liver	Liver
9	chr7:105538800-105564200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr7:105539000-105550600	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr7:105539000-105551200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr7:105539400-105551200	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr7:105542000-105551400	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr7:105542600-105550400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr7:105543000-105551200	Weak transcription	A549	lung
16	chr7:105543000-105551200	Weak transcription	NHDF-Ad	bronchial
17	chr7:105544600-105550800	Weak transcription	Fetal Intestine Large	intestine
18	chr7:105544800-105562000	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr7:105547000-105551400	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr7:105547000-105577800	Weak transcription	Gastric	stomach
21	chr7:105547200-105550600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr7:105547200-105551000	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr7:105547200-105551200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr7:105547400-105551200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
25	chr7:105547400-105551200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr7:105547400-105551200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr7:105547400-105551200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr7:105547400-105551200	Weak transcription	Fetal Brain Female	brain
29	chr7:105547400-105551200	Weak transcription	Rectal Mucosa Donor 29	rectum
30	chr7:105547400-105552600	Weak transcription	Adipose Nuclei	Adipose
31	chr7:105547400-105573400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr7:105548000-105551000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr7:105548000-105551000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr7:105548000-105551000	Weak transcription	Stomach Smooth Muscle	stomach
35	chr7:105548000-105551200	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr7:105548000-105551200	Weak transcription	Fetal Muscle Leg	muscle
37	chr7:105548000-105566600	Weak transcription	Colon Smooth Muscle	Colon
38	chr7:105548000-105567200	Weak transcription	Pancreas	Pancrea
39	chr7:105548200-105550800	Weak transcription	Fetal Muscle Trunk	muscle
40	chr7:105548200-105552000	Weak transcription	Brain Cingulate Gyrus	brain
41	chr7:105548200-105553400	Weak transcription	Brain Anterior Caudate	brain
42	chr7:105548400-105572400	Weak transcription	Rectal Smooth Muscle	rectum
43	chr7:105548600-105550400	Weak transcription	HepG2	liver
44	chr7:105548600-105550800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr7:105548600-105551200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr7:105549400-105552400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr7:105549600-105553000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr7:105549600-105557800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
49	chr7:105549800-105551200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
50	chr7:105549800-105551400	Weak transcription	Primary T helper cells PMA-I stimulated	--

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