The 2.0 version of rSNPBase

Variant report

Variant rs17361886
Chromosome Location chr1:172137019-172137020
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:44 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:172123400-172149200 Weak transcription Brain Anterior Caudate brain
2 chr1:172125200-172137800 Weak transcription Fetal Kidney kidney
3 chr1:172125600-172137400 Weak transcription NHLF lung
4 chr1:172128400-172149800 Weak transcription Aorta Aorta
5 chr1:172131000-172137800 Weak transcription Fetal Stomach stomach
6 chr1:172132600-172137400 Weak transcription Right Ventricle heart
7 chr1:172132800-172137200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
8 chr1:172132800-172137600 Weak transcription Pancreas Pancrea
9 chr1:172132800-172150000 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
10 chr1:172133000-172137200 Weak transcription HSMM muscle
11 chr1:172133000-172137400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
12 chr1:172133200-172137600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
13 chr1:172133400-172137600 Weak transcription Muscle Satellite Cultured Cells --
14 chr1:172133600-172137200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
15 chr1:172134000-172137200 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
16 chr1:172134000-172137400 Weak transcription NH-A brain
17 chr1:172134000-172137600 Weak transcription Osteobl bone
18 chr1:172134000-172139200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
19 chr1:172134200-172137400 Weak transcription Brain Germinal Matrix brain
20 chr1:172134200-172137400 Weak transcription Brain Substantia Nigra brain
21 chr1:172134200-172137600 Weak transcription Fetal Adrenal Gland Adrenal Gland
22 chr1:172134200-172137600 Weak transcription Right Atrium heart
23 chr1:172134800-172137200 Weak transcription Placenta Amnion Placenta Amnion
24 chr1:172134800-172137400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
25 chr1:172134800-172139400 Weak transcription Sigmoid Colon Sigmoid Colon
26 chr1:172135200-172137400 Weak transcription NHEK skin
27 chr1:172136800-172137400 Enhancers Dnd41 blood
28 chr1:172136800-172138200 Enhancers Primary hematopoietic stem cells G-CSF-mobilized Female --
29 chr1:172136800-172138600 Enhancers Brain Hippocampus Middle brain
30 chr1:172136800-172140400 Enhancers Fetal Heart heart
31 chr1:172137000-172137200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
32 chr1:172137000-172137200 Enhancers Brain Angular Gyrus brain
33 chr1:172137000-172137400 Flanking Active TSS A549 lung
34 chr1:172137000-172137800 Enhancers Rectal Mucosa Donor 29 rectum
35 chr1:172137000-172138000 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
36 chr1:172137000-172138000 Active TSS Duodenum Mucosa Duodenum
37 chr1:172137000-172138200 Enhancers HSMMtube muscle
38 chr1:172137000-172138600 Enhancers Cortex derived primary cultured neurospheres brain
39 chr1:172137000-172138600 Enhancers Brain Inferior Temporal Lobe brain
40 chr1:172137000-172138800 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
41 chr1:172137000-172138800 Enhancers NHDF-Ad bronchial
42 chr1:172137000-172139200 Enhancers Brain Cingulate Gyrus brain
43 chr1:172137000-172139600 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
44 chr1:172137000-172139800 Enhancers Fetal Lung lung

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Last update: Aug 31, 2015