Variant report

Variant	rs17362909
Chromosome Location	chr2:179900673-179900674
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7597990	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949133	chr2:179711376-180124327	Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv875455	chr2:179732845-179909467	Weak transcription Enhancers Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv875457	chr2:179775893-179966804	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv875458	chr2:179780624-179966804	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv875461	chr2:179843612-179900720	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv875462	chr2:179843612-179901443	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv875463	chr2:179843612-179909467	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv875464	chr2:179843612-179939493	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv875465	chr2:179843612-179966804	Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv875466	chr2:179856777-179909467	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv508184	chr2:179896384-179965419	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179894800-179906800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:179897200-179901200	Weak transcription	Fetal Muscle Leg	muscle
3	chr2:179897200-179901600	Weak transcription	Psoas Muscle	Psoas
4	chr2:179897200-179910600	Weak transcription	Fetal Intestine Large	intestine
5	chr2:179897400-179901600	Weak transcription	Left Ventricle	heart
6	chr2:179897400-179906200	Weak transcription	Primary B cells from cord blood	blood
7	chr2:179897400-179910600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr2:179897400-179913000	Weak transcription	Thymus	Thymus
9	chr2:179897400-179913400	Weak transcription	Fetal Thymus	thymus
10	chr2:179897400-179913800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr2:179897600-179901600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr2:179897600-179901600	Weak transcription	Fetal Heart	heart
13	chr2:179897600-179901800	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr2:179897600-179902600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr2:179897600-179909200	Weak transcription	Right Ventricle	heart
16	chr2:179897600-179912600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr2:179897600-179913800	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr2:179898600-179901800	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr2:179898800-179901600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr2:179899200-179908200	Weak transcription	Primary T cells from cord blood	blood

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