Variant report

Variant	rs17368059
Chromosome Location	chr1:85180898-85180899
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:85155315..85160651-chr1:85179679..85182911,5	K562	blood:

Variant related genes	Relation type
ENSG00000117155	Chromatin interaction

rs_ID	r²[population]
rs12064969	0.83[EUR][1000 genomes]
rs1340526	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs1927	0.81[EUR][1000 genomes]
rs41289031	0.91[EUR][1000 genomes]
rs4907001	0.83[EUR][1000 genomes]
rs4907087	0.85[EUR][1000 genomes]
rs6702974	0.83[EUR][1000 genomes]

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85171600-85184400	Weak transcription	Fetal Kidney	kidney
2	chr1:85175000-85184200	Weak transcription	Fetal Intestine Large	intestine
3	chr1:85176000-85181400	Weak transcription	Fetal Intestine Small	intestine
4	chr1:85176200-85181200	Weak transcription	Brain Angular Gyrus	brain
5	chr1:85177000-85181000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:85177000-85183200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr1:85177200-85181200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr1:85177200-85181800	Enhancers	Fetal Brain Male	brain
9	chr1:85178000-85185200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr1:85178400-85181200	Weak transcription	Rectal Smooth Muscle	rectum
11	chr1:85178600-85181200	Weak transcription	Stomach Mucosa	stomach
12	chr1:85178600-85185000	Weak transcription	NH-A	brain
13	chr1:85178800-85181200	Weak transcription	K562	blood
14	chr1:85178800-85184600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr1:85178800-85184800	Weak transcription	NHLF	lung
16	chr1:85178800-85185600	Weak transcription	Osteobl	bone
17	chr1:85179000-85181200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr1:85179600-85182200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr1:85179600-85182200	Enhancers	Fetal Brain Female	brain
20	chr1:85179600-85185000	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr1:85180000-85181600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
22	chr1:85180000-85182200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr1:85180200-85184800	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr1:85180400-85181800	Enhancers	Fetal Thymus	thymus
25	chr1:85180400-85182000	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr1:85180400-85182000	Enhancers	Stomach Smooth Muscle	stomach
27	chr1:85180800-85181600	Enhancers	Colon Smooth Muscle	Colon

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