Variant report

Variant	rs17369331
Chromosome Location	chr1:172370049-172370050
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:172368766..172370642-chr1:172413206..172415397,2	K562	blood:
2	chr1:172368021..172370277-chr1:172372809..172374587,2	K562	blood:
3	chr1:172369690..172372664-chr1:172375281..172378143,4	K562	blood:
4	chr1:172059095..172060013-chr1:172369694..172372109,8	MCF-7	breast:
5	chr1:172059201..172061771-chr1:172370034..172372067,2	MCF-7	breast:
6	chr1:172368576..172370246-chr1:172375053..172377189,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135845	Chromatin interaction
ENSG00000180999	Chromatin interaction

rs_ID	r²[population]
rs7528296	1.00[LWK][hapmap]

SNP	Gene	Cis/trans	Tissue	Source
rs17369331	SNORD80	cis	parietal	SCAN
rs17369331	FMO4	cis	parietal	SCAN

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172352400-172386400	Weak transcription	Psoas Muscle	Psoas
2	chr1:172366200-172370200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr1:172366200-172370200	Enhancers	NH-A	brain
4	chr1:172366800-172371200	Enhancers	Rectal Smooth Muscle	rectum
5	chr1:172367000-172370600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
6	chr1:172367000-172372800	Enhancers	Primary T cells from cord blood	blood
7	chr1:172367200-172370800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr1:172367200-172370800	Enhancers	Fetal Stomach	stomach
9	chr1:172367200-172372000	Enhancers	Fetal Lung	lung
10	chr1:172367600-172370600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr1:172367600-172370800	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr1:172367800-172370200	Enhancers	HSMMtube	muscle
13	chr1:172368000-172370200	Enhancers	Placenta Amnion	Placenta Amnion
14	chr1:172368200-172370200	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr1:172368200-172370800	Enhancers	Primary T helper naive cells from peripheral blood	blood
16	chr1:172368400-172370200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
17	chr1:172368400-172370200	Enhancers	Fetal Muscle Leg	muscle
18	chr1:172368400-172390800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr1:172368600-172370200	Enhancers	Muscle Satellite Cultured Cells	--
20	chr1:172368600-172370200	Enhancers	NHDF-Ad	bronchial
21	chr1:172368600-172370800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr1:172368600-172374800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr1:172368800-172370200	Enhancers	GM12878-XiMat	blood
24	chr1:172368800-172370600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr1:172368800-172370600	Enhancers	Colon Smooth Muscle	Colon
26	chr1:172368800-172370600	Enhancers	Fetal Kidney	kidney
27	chr1:172368800-172370800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr1:172368800-172371400	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr1:172368800-172376800	Weak transcription	Fetal Brain Male	brain
30	chr1:172369000-172371600	Enhancers	Ovary	ovary
31	chr1:172369200-172370200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr1:172369200-172370200	Enhancers	Small Intestine	intestine
33	chr1:172369200-172372400	Enhancers	Aorta	Aorta
34	chr1:172369400-172371000	Weak transcription	K562	blood
35	chr1:172369400-172371800	Enhancers	Primary T helper cells PMA-I stimulated	--
36	chr1:172369400-172372000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr1:172369400-172372200	Weak transcription	Brain Substantia Nigra	brain
38	chr1:172369400-172372400	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr1:172369400-172373200	Weak transcription	Fetal Brain Female	brain
40	chr1:172369600-172370800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr1:172369600-172371600	Weak transcription	Brain Anterior Caudate	brain
42	chr1:172369600-172371800	Weak transcription	Brain Cingulate Gyrus	brain
43	chr1:172369600-172372000	Weak transcription	Brain Angular Gyrus	brain
44	chr1:172369600-172372200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr1:172369600-172372200	Weak transcription	Fetal Intestine Small	intestine
46	chr1:172369600-172372400	Weak transcription	Brain Hippocampus Middle	brain
47	chr1:172369600-172372400	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr1:172369600-172377000	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr1:172369600-172377600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr1:172369800-172370600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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