Variant report

Variant	rs17370084
Chromosome Location	chr1:179723197-179723198
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12128439	1.00[CHB][hapmap]
rs2454192	1.00[ASN][1000 genomes]
rs2487738	0.95[ASN][1000 genomes]
rs34374290	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34780349	0.97[EUR][1000 genomes]
rs6685904	1.00[CHD][hapmap]
rs7535874	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009961	chr1:179714247-179790110	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv33942	chr1:179722838-179724322	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17370084	MR1	cis	parietal	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179721600-179723800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr1:179722400-179723800	Enhancers	Osteobl	bone
3	chr1:179722400-179724000	Enhancers	Colon Smooth Muscle	Colon
4	chr1:179722600-179724000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr1:179722600-179724000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr1:179722800-179723600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr1:179722800-179723800	Enhancers	HSMMtube	muscle
8	chr1:179722800-179724000	Enhancers	Rectal Smooth Muscle	rectum
9	chr1:179723000-179723800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr1:179723000-179723800	Enhancers	Duodenum Smooth Muscle	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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