Variant report

Variant	rs1737090
Chromosome Location	chr6:4879916-4879917
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:4581473..4584314-chr6:4877773..4880239,2	K562	blood:
2	chr6:4878191..4880805-chr6:4882424..4884117,2	K562	blood:
3	chr6:4878197..4881265-chr6:4885596..4887989,3	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1091274	1.00[AFR][1000 genomes]
rs1891044	0.80[AFR][1000 genomes]
rs6934198	0.80[AFR][1000 genomes]
rs808591	0.94[AFR][1000 genomes]
rs808605	0.91[AFR][1000 genomes]
rs808609	0.91[AFR][1000 genomes]
rs808610	0.91[AFR][1000 genomes]
rs808612	0.84[AFR][1000 genomes]
rs808613	0.84[AFR][1000 genomes]
rs808614	0.84[AFR][1000 genomes]
rs808617	1.00[AFR][1000 genomes]
rs808619	1.00[AFR][1000 genomes]
rs808621	0.94[AFR][1000 genomes]
rs808623	1.00[AFR][1000 genomes]
rs808624	1.00[AFR][1000 genomes]
rs808629	0.94[AFR][1000 genomes]
rs808633	0.94[AFR][1000 genomes]
rs808636	0.94[AFR][1000 genomes]
rs808637	0.94[AFR][1000 genomes]
rs947150	0.80[AFR][1000 genomes]
rs9504287	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023527	chr6:4729592-5387176	Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv2422499	chr6:4745428-5073222	Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv1015888	chr6:4787784-4883663	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv830577	chr6:4834567-5050544	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4855200-4882200	Weak transcription	Fetal Stomach	stomach
2	chr6:4856800-4883600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:4858800-4880400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:4865600-4892200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:4866600-4880200	Weak transcription	HSMM	muscle
6	chr6:4868600-4880200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr6:4869600-4890000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr6:4871400-4891400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:4871400-4892000	Weak transcription	NHEK	skin
10	chr6:4872000-4883800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr6:4872000-4892000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:4872200-4898800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:4872400-4880200	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr6:4872400-4880600	Weak transcription	Primary B cells from peripheral blood	blood
15	chr6:4873400-4880000	Weak transcription	Fetal Intestine Small	intestine
16	chr6:4873400-4883600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr6:4874000-4891200	Weak transcription	Primary T cells from cord blood	blood
18	chr6:4874200-4882200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr6:4874200-4892000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:4874200-4892000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr6:4874200-4894000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:4874800-4892000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:4875000-4882200	Weak transcription	Brain Hippocampus Middle	brain
24	chr6:4875000-4882200	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr6:4875200-4880200	Weak transcription	Gastric	stomach
26	chr6:4875200-4892000	Weak transcription	Aorta	Aorta
27	chr6:4875400-4880000	Weak transcription	K562	blood
28	chr6:4875400-4880200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr6:4875400-4882200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr6:4875400-4882200	Weak transcription	Brain Anterior Caudate	brain
31	chr6:4875400-4882200	Weak transcription	Right Ventricle	heart
32	chr6:4875600-4880800	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr6:4875600-4890200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr6:4875800-4880200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr6:4876200-4884400	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr6:4876800-4884400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
37	chr6:4877000-4892400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr6:4877200-4880200	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr6:4877200-4880400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr6:4877200-4892000	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr6:4877200-4892800	Weak transcription	Rectal Smooth Muscle	rectum
42	chr6:4877400-4880000	Weak transcription	Primary hematopoietic stem cells	blood
43	chr6:4877400-4880000	Weak transcription	Small Intestine	intestine
44	chr6:4877400-4880200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr6:4877400-4880200	Weak transcription	Pancreas	Pancrea
46	chr6:4877400-4882200	Weak transcription	H1 Cell Line	embryonic stem cell
47	chr6:4877400-4883200	Weak transcription	Left Ventricle	heart
48	chr6:4877400-4883600	Weak transcription	Lung	lung
49	chr6:4877400-4883600	Weak transcription	Psoas Muscle	Psoas
50	chr6:4877400-4883600	Weak transcription	Sigmoid Colon	Sigmoid Colon

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