Variant report

Variant	rs17371089
Chromosome Location	chr4:96298026-96298027
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10005976	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs12502414	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs12505551	0.80[CEU][hapmap]
rs13117954	0.90[CEU][hapmap];0.91[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs17023685	1.00[CEU][hapmap];0.90[JPT][hapmap];0.94[EUR][1000 genomes]
rs17437679	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1994175	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2621457	0.81[JPT][hapmap]
rs2621458	0.81[JPT][hapmap]
rs34023803	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34959330	0.85[AMR][1000 genomes]
rs35019760	0.82[AMR][1000 genomes]
rs71601273	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv1001955	chr4:96216118-96445841	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv3431304	chr4:96295779-96299277	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96285200-96334600	Weak transcription	Aorta	Aorta
2	chr4:96285800-96305400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr4:96293400-96298200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr4:96293400-96303400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:96293600-96298200	Weak transcription	Brain Hippocampus Middle	brain
6	chr4:96295400-96302400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr4:96295400-96302400	Weak transcription	Fetal Lung	lung
8	chr4:96295800-96305400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr4:96296400-96316000	Weak transcription	Fetal Kidney	kidney
10	chr4:96297800-96298800	Enhancers	Brain Substantia Nigra	brain
11	chr4:96298000-96298400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:96298000-96298400	Enhancers	Brain Anterior Caudate	brain
13	chr4:96298000-96298600	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr4:96298000-96298800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr4:96298000-96299000	Enhancers	Brain Angular Gyrus	brain
16	chr4:96298000-96299000	Enhancers	Brain Cingulate Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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