Variant report

Variant	rs1737331
Chromosome Location	chr6:163809329-163809330
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:163809321..163814449-chr6:163833285..163837367,4	K562	blood:
2	chr6:163808044..163809633-chr6:163814692..163817070,2	K562	blood:
3	chr6:163800485..163802168-chr6:163807944..163809587,2	K562	blood:

Variant related genes	Relation type
ENSG00000112531	Chromatin interaction
ENSG00000270419	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1234977	1.00[CHB][hapmap]
rs1737608	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1744929	1.00[CHB][hapmap]
rs1764022	1.00[CHB][hapmap]
rs2757573	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2757575	1.00[CHB][hapmap]
rs2757576	1.00[CHB][hapmap]
rs2757585	1.00[CHB][hapmap]
rs2759386	1.00[CHB][hapmap]
rs2759396	1.00[CHB][hapmap]
rs783137	1.00[CHB][hapmap]
rs783139	1.00[CHB][hapmap]
rs803612	1.00[CHB][hapmap]
rs9347765	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9365575	1.00[CHB][hapmap]
rs9458843	1.00[CHB][hapmap]
rs9458860	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1022610	chr6:163591786-163814041	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv534621	chr6:163731741-163950870	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163791000-163813000	Weak transcription	Right Atrium	heart
2	chr6:163802600-163812800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:163803200-163812600	Weak transcription	Fetal Heart	heart
4	chr6:163805400-163813000	Weak transcription	HSMM	muscle
5	chr6:163806400-163809400	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr6:163806400-163810000	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr6:163806400-163810200	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr6:163807600-163809400	Enhancers	Fetal Muscle Leg	muscle
9	chr6:163807800-163809800	Enhancers	Spleen	Spleen
10	chr6:163807800-163810000	Enhancers	HepG2	liver
11	chr6:163808000-163812800	Weak transcription	Brain Hippocampus Middle	brain
12	chr6:163808000-163813400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr6:163808000-163817000	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr6:163808200-163809400	Enhancers	Fetal Muscle Trunk	muscle
15	chr6:163808200-163809400	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr6:163808200-163812800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:163808400-163812800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:163808600-163812800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:163808600-163817600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr6:163808800-163809800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr6:163808800-163812400	Weak transcription	NHEK	skin
22	chr6:163808800-163812600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr6:163808800-163812600	Weak transcription	Hela-S3	cervix
24	chr6:163808800-163812600	Weak transcription	HMEC	breast
25	chr6:163808800-163812800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr6:163809000-163809600	Enhancers	Psoas Muscle	Psoas
27	chr6:163809000-163812600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr6:163809200-163809400	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr6:163809200-163813200	Weak transcription	HUVEC	blood vessel

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