Variant report

Variant	rs1737610
Chromosome Location	chr6:163916079-163916080
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12210561	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1230320	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1234977	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1572434	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1614869	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1744929	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1764022	0.92[AFR][1000 genomes]
rs2259476	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2259477	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2475390	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2757575	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2757576	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2757584	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2757585	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2759386	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2759396	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6939187	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73021476	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7450397	0.81[ASN][1000 genomes]
rs783137	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs783139	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs803612	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9347752	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9347758	0.87[ASN][1000 genomes]
rs9347765	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9347766	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9365575	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9458843	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932127	chr6:163000261-163950870	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv534621	chr6:163731741-163950870	Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1019551	chr6:163842358-163965216	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1017495	chr6:163856399-163981095	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1737610	QKI	cis	Whole Blood	GTEx

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:163898400-163926000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:163902600-163921800	Weak transcription	HepG2	liver
3	chr6:163903000-163924200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr6:163903600-163926000	Weak transcription	Lung	lung
5	chr6:163904000-163917400	Weak transcription	Fetal Muscle Leg	muscle
6	chr6:163905000-163918400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:163905800-163921800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:163906800-163916800	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr6:163906800-163919400	Weak transcription	Ovary	ovary
10	chr6:163907200-163925000	Weak transcription	Fetal Muscle Trunk	muscle
11	chr6:163907200-163926000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr6:163908600-163917200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr6:163909200-163921000	Weak transcription	Primary B cells from cord blood	blood
14	chr6:163909400-163923800	Weak transcription	Aorta	Aorta
15	chr6:163909600-163922600	Weak transcription	Fetal Brain Female	brain
16	chr6:163911200-163917600	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr6:163911200-163926000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:163911200-163926200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:163911600-163928000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:163911800-163917000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr6:163911800-163934800	Weak transcription	Pancreas	Pancrea
22	chr6:163912000-163918600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr6:163912200-163917200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr6:163912200-163917200	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr6:163912200-163917200	Weak transcription	Adipose Nuclei	Adipose
26	chr6:163912200-163920800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:163912200-163921600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr6:163912200-163921600	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr6:163912400-163917400	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr6:163912400-163921000	Weak transcription	Fetal Lung	lung
31	chr6:163912400-163921000	Weak transcription	NHLF	lung
32	chr6:163912400-163926200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr6:163912600-163925200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr6:163912800-163916800	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr6:163913000-163917000	Weak transcription	Colon Smooth Muscle	Colon
36	chr6:163913000-163928000	Weak transcription	HUVEC	blood vessel
37	chr6:163913200-163916800	Weak transcription	Rectal Smooth Muscle	rectum
38	chr6:163913200-163917000	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr6:163913400-163917200	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr6:163913400-163917400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr6:163913800-163922800	Enhancers	Brain Angular Gyrus	brain
42	chr6:163914000-163917600	Enhancers	Brain Inferior Temporal Lobe	brain
43	chr6:163914000-163918000	Enhancers	Brain Anterior Caudate	brain
44	chr6:163914400-163916200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr6:163914400-163917800	Enhancers	Skeletal Muscle Male	skeletal muscle
46	chr6:163914400-163918000	Enhancers	Skeletal Muscle Female	skeletal muscle
47	chr6:163914400-163918200	Enhancers	Brain Cingulate Gyrus	brain
48	chr6:163914600-163916400	Enhancers	Psoas Muscle	Psoas
49	chr6:163914800-163916200	Enhancers	Brain Germinal Matrix	brain
50	chr6:163915200-163917000	Enhancers	Liver	Liver

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