Variant report

Variant	rs1737618
Chromosome Location	chr1:10850844-10850845
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:10845553..10848125-chr1:10850138..10852600,3	K562	blood:
2	chr1:10842482..10848125-chr1:10848980..10851638,6	K562	blood:
3	chr1:10849936..10852121-chr1:10862598..10865069,2	MCF-7	breast:
4	chr1:10844848..10846600-chr1:10849657..10852502,2	MCF-7	breast:
5	chr1:10850430..10851341-chr19:18956907..18957709,2	MCF-7	breast:
6	chr1:10708228..10710600-chr1:10848696..10851530,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11121617	1.00[CHB][hapmap]
rs2387416	0.90[ASN][1000 genomes]
rs2387417	0.90[ASN][1000 genomes]
rs55926240	0.90[ASN][1000 genomes]
rs58708213	0.95[ASN][1000 genomes]
rs800761	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs811855	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv29966	chr1:10676800-10874152	Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870849	chr1:10694125-10894724	Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv529981	chr1:10697093-11353487	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
4	nsv832314	chr1:10704811-10859919	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	esv2757723	chr1:10742502-11055147	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	esv2758921	chr1:10742502-11055147	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	nsv871772	chr1:10832322-10894724	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv870589	chr1:10840905-10901994	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10832600-10853400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:10838600-10852400	Enhancers	Fetal Heart	heart
3	chr1:10842600-10851400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr1:10845000-10851800	Enhancers	Stomach Mucosa	stomach
5	chr1:10848200-10851400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr1:10848600-10852200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:10848800-10851400	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr1:10849000-10853400	Weak transcription	Pancreas	Pancrea
9	chr1:10849000-10853400	Weak transcription	Spleen	Spleen
10	chr1:10849200-10851000	Bivalent Enhancer	Fetal Kidney	kidney
11	chr1:10849200-10851400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr1:10849200-10852000	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr1:10849200-10853400	Weak transcription	Esophagus	oesophagus
14	chr1:10849200-10853400	Weak transcription	HMEC	breast
15	chr1:10849400-10851400	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
16	chr1:10849600-10852200	Active TSS	Pancreatic Islets	Pancreatic Islet
17	chr1:10849600-10853400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr1:10849600-10853400	Weak transcription	Right Atrium	heart
19	chr1:10849800-10851400	Enhancers	Fetal Intestine Small	intestine
20	chr1:10849800-10853000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr1:10850200-10851200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr1:10850200-10851600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr1:10850200-10851600	Weak transcription	Colonic Mucosa	Colon
24	chr1:10850200-10853200	Enhancers	Fetal Intestine Large	intestine
25	chr1:10850200-10853200	Weak transcription	Right Ventricle	heart
26	chr1:10850200-10853400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr1:10850400-10851400	Weak transcription	Left Ventricle	heart
28	chr1:10850400-10851400	Weak transcription	Psoas Muscle	Psoas
29	chr1:10850400-10851400	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr1:10850400-10853800	Weak transcription	Gastric	stomach
31	chr1:10850600-10852000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr1:10850600-10852000	Flanking Active TSS	Stomach Smooth Muscle	stomach
33	chr1:10850800-10851400	Enhancers	Rectal Smooth Muscle	rectum
34	chr1:10850800-10851600	Enhancers	Rectal Mucosa Donor 31	rectum
35	chr1:10850800-10852000	Enhancers	Colon Smooth Muscle	Colon

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