Variant report

Variant	rs17377506
Chromosome Location	chr1:155491413-155491414
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10752610	1.00[ASN][1000 genomes]
rs10908468	0.85[CEU][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12077729	1.00[ASN][1000 genomes]
rs171167	0.84[EUR][1000 genomes]
rs17367421	1.00[ASN][1000 genomes]
rs1962247	0.84[EUR][1000 genomes]
rs348206	0.84[EUR][1000 genomes]
rs41264969	0.84[EUR][1000 genomes]
rs4933	0.84[EUR][1000 genomes]
rs4971050	0.85[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs4971086	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4971087	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs543854	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs548809	0.84[EUR][1000 genomes]
rs552778	0.85[CEU][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs61258690	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs621181	1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs7340058	0.85[CEU][hapmap];1.00[TSI][hapmap];1.00[ASN][1000 genomes]
rs7525057	0.85[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs7535158	0.84[EUR][1000 genomes]
rs9426929	0.84[EUR][1000 genomes]
rs9427223	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529709	chr1:155154933-155757219	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	450 gene(s)	inside rSNPs	diseases
2	esv33869	chr1:155223283-155917961	Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	187 gene(s)	inside rSNPs	diseases
3	esv1799856	chr1:155305059-155534616	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1795662	chr1:155305059-155540660	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
5	esv1795478	chr1:155334933-155510824	Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	esv1803551	chr1:155334933-155522572	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	esv1800974	chr1:155367680-155510824	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv872468	chr1:155413304-155549562	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155452400-155505200	Weak transcription	Placenta	Placenta
2	chr1:155462800-155497400	Weak transcription	Pancreas	Pancrea
3	chr1:155466600-155500600	Weak transcription	Aorta	Aorta
4	chr1:155470400-155492000	Weak transcription	NH-A	brain
5	chr1:155470400-155495000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr1:155470400-155501400	Weak transcription	Fetal Kidney	kidney
7	chr1:155470600-155492600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr1:155470600-155493200	Weak transcription	Small Intestine	intestine
9	chr1:155470600-155498600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr1:155470800-155493000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:155471200-155498800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr1:155474200-155501400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr1:155476400-155518200	Weak transcription	HMEC	breast
14	chr1:155477600-155509400	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr1:155478000-155498800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr1:155478200-155506000	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr1:155478400-155492600	Weak transcription	Esophagus	oesophagus
18	chr1:155478400-155492600	Weak transcription	Lung	lung
19	chr1:155478400-155493000	Weak transcription	Right Ventricle	heart
20	chr1:155478400-155493000	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr1:155478400-155493400	Weak transcription	Fetal Lung	lung
22	chr1:155478400-155497200	Weak transcription	Brain Angular Gyrus	brain
23	chr1:155478400-155510400	Weak transcription	Stomach Mucosa	stomach
24	chr1:155478400-155518200	Weak transcription	Stomach Smooth Muscle	stomach
25	chr1:155478600-155493200	Weak transcription	Adipose Nuclei	Adipose
26	chr1:155478800-155493000	Weak transcription	Brain Hippocampus Middle	brain
27	chr1:155478800-155493200	Weak transcription	Colon Smooth Muscle	Colon
28	chr1:155478800-155496400	Weak transcription	Brain Cingulate Gyrus	brain
29	chr1:155478800-155497600	Weak transcription	Brain Substantia Nigra	brain
30	chr1:155479200-155493200	Weak transcription	Brain Anterior Caudate	brain
31	chr1:155479400-155499800	Weak transcription	HepG2	liver
32	chr1:155479600-155493000	Weak transcription	Psoas Muscle	Psoas
33	chr1:155482000-155492000	Weak transcription	HUVEC	blood vessel
34	chr1:155483200-155497400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr1:155483200-155524400	Weak transcription	Fetal Brain Female	brain
36	chr1:155483400-155496000	Weak transcription	HSMM	muscle
37	chr1:155483400-155497400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr1:155483400-155497600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr1:155483400-155528600	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr1:155483600-155491800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr1:155483600-155493400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr1:155484000-155491800	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr1:155484000-155493400	Weak transcription	NHLF	lung
44	chr1:155484600-155493200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr1:155485000-155499000	Weak transcription	Primary hematopoietic stem cells	blood
46	chr1:155485200-155492800	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr1:155485200-155493000	Weak transcription	Gastric	stomach
48	chr1:155485200-155493000	Weak transcription	Left Ventricle	heart
49	chr1:155485200-155493000	Weak transcription	Spleen	Spleen
50	chr1:155485200-155505400	Weak transcription	K562	blood

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