Variant report
| Variant | rs17378004 |
|---|---|
| Chromosome Location | chr12:87805083-87805084 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs10735255 | 0.98[ASN][1000 genomes] |
| rs10745441 | 0.98[ASN][1000 genomes] |
| rs10777030 | 0.87[ASN][1000 genomes] |
| rs11104444 | 0.98[ASN][1000 genomes] |
| rs17325004 | 0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2897516 | 0.98[ASN][1000 genomes] |
| rs35894350 | 0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4492892 | 0.98[ASN][1000 genomes] |
| rs4603386 | 0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7310374 | 0.98[ASN][1000 genomes] |
| rs7310611 | 0.94[ASN][1000 genomes] |
| rs73411827 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73411887 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv430523 | chr12:87757132-87865832 | Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv430525 | chr12:87757132-87905532 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | esv3329221 | chr12:87785317-87833393 | Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 4 | nsv559701 | chr12:87801947-87905878 | ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | esv3350469 | chr12:87802235-87844904 | Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:87801800-87817600 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
