Variant report

Variant	rs17379690
Chromosome Location	chr3:79024541-79024542
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1009682	1.00[GIH][hapmap]
rs1031933	1.00[MEX][hapmap]
rs17016656	1.00[MEX][hapmap]
rs9832632	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv834744	chr3:78911545-79076470	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:79011400-79027400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:79016800-79024800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:79018000-79027600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr3:79018200-79027600	Weak transcription	Brain Angular Gyrus	brain
5	chr3:79018600-79027600	Weak transcription	Brain Hippocampus Middle	brain
6	chr3:79018600-79027600	Weak transcription	Brain Substantia Nigra	brain
7	chr3:79019200-79025400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr3:79019600-79025400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr3:79019600-79027400	Weak transcription	Brain Anterior Caudate	brain
10	chr3:79020600-79027800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr3:79022200-79026200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr3:79022200-79027600	Weak transcription	Psoas Muscle	Psoas
13	chr3:79022400-79041600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:79023400-79026400	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr3:79023400-79031800	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr3:79023600-79025600	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr3:79023600-79026200	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr3:79023800-79024800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr3:79023800-79026000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr3:79023800-79026200	Weak transcription	HUVEC	blood vessel
21	chr3:79023800-79027000	Enhancers	HSMM	muscle
22	chr3:79023800-79027800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr3:79023800-79028200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr3:79023800-79037400	Weak transcription	A549	lung
25	chr3:79024000-79024800	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr3:79024000-79025200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr3:79024000-79025600	Weak transcription	NH-A	brain
28	chr3:79024000-79025600	Weak transcription	NHEK	skin
29	chr3:79024000-79026000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr3:79024000-79026000	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr3:79024000-79026000	Weak transcription	NHDF-Ad	bronchial
32	chr3:79024400-79024800	Enhancers	Fetal Lung	lung
33	chr3:79024400-79025400	Weak transcription	Osteobl	bone
34	chr3:79024400-79025800	Enhancers	HepG2	liver
35	chr3:79024400-79026000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr3:79024400-79026400	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr3:79024400-79028800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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