Variant report

Variant	rs17380188
Chromosome Location	chr11:105169029-105169030
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10502055	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10502056	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11600551	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11601207	0.84[AMR][1000 genomes]
rs11601213	0.84[AMR][1000 genomes]
rs11603652	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11604474	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11606062	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11606089	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12284832	0.81[EUR][1000 genomes]
rs12287628	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12287683	0.82[EUR][1000 genomes]
rs12288207	0.83[EUR][1000 genomes]
rs1449049	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1584447	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs17381570	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17466579	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17468921	0.82[AMR][1000 genomes]
rs1945955	0.84[AMR][1000 genomes]
rs1945956	0.84[AMR][1000 genomes]
rs34779210	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4427540	0.84[AMR][1000 genomes]
rs4619125	0.84[AMR][1000 genomes]
rs55684902	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs55716661	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55860203	0.84[AMR][1000 genomes]
rs55917055	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55954762	0.84[AMR][1000 genomes]
rs55957580	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56024169	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs56219931	0.84[AMR][1000 genomes]
rs56334909	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58893767	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60064890	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61891469	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61891495	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61891496	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61891497	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61891502	0.82[EUR][1000 genomes]
rs61891511	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs61891543	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61891544	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61891545	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs61891548	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs61893404	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs61900581	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61900587	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs61900598	0.83[AMR][1000 genomes]
rs6650182	0.85[ASN][1000 genomes]
rs7104574	0.81[ASN][1000 genomes]
rs7122612	0.84[AMR][1000 genomes]
rs72981816	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72981829	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7934954	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7939696	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7943657	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv468862	chr11:104774014-105243371	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv556218	chr11:104774014-105243371	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv1044970	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv541160	chr11:104809246-105225032	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv949337	chr11:104950007-105510193	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv1049401	chr11:105096619-105225032	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1042715	chr11:105158641-105237086	Enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105167600-105169600	Enhancers	NHDF-Ad	bronchial
2	chr11:105167600-105169800	Enhancers	NHEK	skin
3	chr11:105167800-105169400	Enhancers	HUVEC	blood vessel
4	chr11:105168000-105169200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr11:105168000-105169800	Enhancers	NH-A	brain
6	chr11:105168000-105169800	Enhancers	Osteobl	bone
7	chr11:105168200-105169800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:105168400-105169800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr11:105168600-105169800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:105168800-105169600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr11:105168800-105169600	Enhancers	NHLF	lung
12	chr11:105169000-105169200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr11:105169000-105169600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr11:105169000-105169600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr11:105169000-105169600	Enhancers	Hela-S3	cervix
16	chr11:105169000-105169600	Enhancers	HMEC	breast
17	chr11:105169000-105169800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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